HHsearch alignment of GI: 254780249 and MMDB domain: 3i1n_F_

>3i1n_F (F:) 50S ribosomal protein L5; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_F 1vs6_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 2qam_F* 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F ...
Probab=100.00  E-value=0  Score=455.29  Aligned_cols=179  Identities=57%  Similarity=1.005  Sum_probs=177.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r    7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR   86 (185)
Q Consensus         7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR   86 (185)
                      +|||++||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+|
T Consensus         1 m~~l~~~Y~~~i~~~l~~k~~~~n~~~~Pkl~KIvin~g~g~a~~~~~~l~~~~~~L~~ItGQkp~~~~aKksia~fkiR   80 (179)
T 3i1n_F            1 MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR   80 (179)
T ss_dssp             -CTHHHHHTTTTHHHHHHHHTCSSGGGSCCEEEEEEECCCSCTTTCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
T ss_conf             90789999999999999975899800166467999965787434561888999999987630535886426533344434


Q ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r   87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT  166 (185)
Q Consensus        87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta  166 (185)
                      ||+|+||||||||++||+||+||+++||||||||+|++.++||++|||+||++|+++||||+||.+++++||||+|||+|
T Consensus        81 kg~~iG~kvTLRg~~m~~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~~~G~~itivt~a  160 (179)
T 3i1n_F           81 QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA  160 (179)
T ss_dssp             TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSSSCCCCCSCCCCSSSBCCEECSSCCSSTTSCGGGCCCCCCCEEEEEESC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             89815899851325679999999998756540135788411155646884307864254345565578687359999625


Q ss_pred             CCHHHHHHHHHHHCCCCCC
Q ss_conf             8968999999980898689
Q gi|254780249|r  167 RSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       167 ~~~~ea~~Lls~~g~Pf~k  185 (185)
                      ++++||+.||+++||||+|
T Consensus       161 ~~~~~a~~ll~~~~~Pf~k  179 (179)
T 3i1n_F          161 KSDEEGRALLAAFDFPFRK  179 (179)
T ss_dssp             SSHHHHHHHHHHSCCCCC-
T ss_pred             CCHHHHHHHHHHCCCCCCC
T ss_conf             9989999999984998479