HHsearch alignment of GI: 254780249 and MMDB domain: 3i1n_F_
>3i1n_F (F:) 50S ribosomal protein L5; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_F 1vs6_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 2qam_F* 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F ...
Probab=100.00 E-value=0 Score=455.29 Aligned_cols=179 Identities=57% Similarity=1.005 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185)
Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185)
+|||++||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+|
T Consensus 1 m~~l~~~Y~~~i~~~l~~k~~~~n~~~~Pkl~KIvin~g~g~a~~~~~~l~~~~~~L~~ItGQkp~~~~aKksia~fkiR 80 (179)
T 3i1n_F 1 MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR 80 (179)
T ss_dssp -CTHHHHHTTTTHHHHHHHHTCSSGGGSCCEEEEEEECCCSCTTTCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
T ss_conf 90789999999999999975899800166467999965787434561888999999987630535886426533344434
Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185)
Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185)
||+|+||||||||++||+||+||+++||||||||+|++.++||++|||+||++|+++||||+||.+++++||||+|||+|
T Consensus 81 kg~~iG~kvTLRg~~m~~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~~~G~~itivt~a 160 (179)
T 3i1n_F 81 QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA 160 (179)
T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSSSCCCCCSCCCCSSSBCCEECSSCCSSTTSCGGGCCCCCCCEEEEEESC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 89815899851325679999999998756540135788411155646884307864254345565578687359999625
Q ss_pred CCHHHHHHHHHHHCCCCCC
Q ss_conf 8968999999980898689
Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185)
++++||+.||+++||||+|
T Consensus 161 ~~~~~a~~ll~~~~~Pf~k 179 (179)
T 3i1n_F 161 KSDEEGRALLAAFDFPFRK 179 (179)
T ss_dssp SSHHHHHHHHHHSCCCCC-
T ss_pred CCHHHHHHHHHHCCCCCCC
T ss_conf 9989999999984998479