HHsearch results for GI: 254780249 and protein with PDBid: 1iq4_A
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00 E-value=0 Score=455.34 Aligned_cols=179 Identities=56% Similarity=1.023 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185)
Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185)
.+|||+||+++|++||+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||++|++||+|
T Consensus 1 M~rLk~~Y~~~v~~dL~~k~~~~N~~~vP~l~KIvvn~gv~~~~~~~~~l~~~~~~l~~ItGQkp~~t~akksi~~fklR 80 (179)
T 1iq4_A 1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80 (179)
T ss_dssp CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 91789999999999999986899820056145999978887222176799999999998708851477657653345425
Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185)
Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185)
||+|+||+|||||++||+||+||+++|+||+|||+|++.++||+.||++||++|+++|||++||++++++||||||||||
T Consensus 81 kg~~iG~kvTLRg~~m~~FL~kli~ivlP~ikdf~g~~~~~~d~~gn~sfGi~e~~~fPei~~d~~~~i~G~~ItivTsa 160 (179)
T 1iq4_A 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA 160 (179)
T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 89845899997501299999999997635642114686321258885032500410477644366689776249999577
Q ss_pred CCHHHHHHHHHHHCCCCCC
Q ss_conf 8968999999980898689
Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185)
++++||++|||+|||||+|
T Consensus 161 ~~~~ea~~Lls~~g~Pf~k 179 (179)
T 1iq4_A 161 NTDEEARELLALLGMPFQK 179 (179)
T ss_dssp SSHHHHHHHHHHHTCCBCC
T ss_pred CCHHHHHHHHHHCCCCCCC
T ss_conf 9979999999985997169