HHsearch results for GI: 254780249 and protein with PDBid: 1iq4_A

>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00  E-value=0  Score=455.34  Aligned_cols=179  Identities=56%  Similarity=1.023  Sum_probs=177.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r    7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR   86 (185)
Q Consensus         7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR   86 (185)
                      .+|||+||+++|++||+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||++|++||+|
T Consensus         1 M~rLk~~Y~~~v~~dL~~k~~~~N~~~vP~l~KIvvn~gv~~~~~~~~~l~~~~~~l~~ItGQkp~~t~akksi~~fklR   80 (179)
T 1iq4_A            1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR   80 (179)
T ss_dssp             CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             91789999999999999986899820056145999978887222176799999999998708851477657653345425


Q ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r   87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT  166 (185)
Q Consensus        87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta  166 (185)
                      ||+|+||+|||||++||+||+||+++|+||+|||+|++.++||+.||++||++|+++|||++||++++++||||||||||
T Consensus        81 kg~~iG~kvTLRg~~m~~FL~kli~ivlP~ikdf~g~~~~~~d~~gn~sfGi~e~~~fPei~~d~~~~i~G~~ItivTsa  160 (179)
T 1iq4_A           81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA  160 (179)
T ss_dssp             TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf             89845899997501299999999997635642114686321258885032500410477644366689776249999577


Q ss_pred             CCHHHHHHHHHHHCCCCCC
Q ss_conf             8968999999980898689
Q gi|254780249|r  167 RSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       167 ~~~~ea~~Lls~~g~Pf~k  185 (185)
                      ++++||++|||+|||||+|
T Consensus       161 ~~~~ea~~Lls~~g~Pf~k  179 (179)
T 1iq4_A          161 NTDEEARELLALLGMPFQK  179 (179)
T ss_dssp             SSHHHHHHHHHHHTCCBCC
T ss_pred             CCHHHHHHHHHHCCCCCCC
T ss_conf             9979999999985997169