HHsearch results for GI: 254780249 and protein with PDBid: 1vq8_D
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=100.00 E-value=0 Score=350.91 Aligned_cols=153 Identities=37% Similarity=0.539 Sum_probs=144.4
Q ss_pred HHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 99998269982228604499997457875653789999999877653896135412376421115589862889996034
Q gi|254780249|r 21 AMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGT 100 (185)
Q Consensus 21 dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~ 100 (185)
...++++|+|+|++|+|+|||||+|+|+++++ +..+..+|+.||||+|+.++||++|++||||+|+|+||+|||||+
T Consensus 3 ~~~~~~~~~~~M~vPkI~KIvvN~Gvg~a~~~---l~~a~~~L~~ITGQkP~~t~AKksia~FklRkG~pIG~kVTLRg~ 79 (177)
T 1vq8_D 3 SESESGGDFHEMREPRIEKVVVHMGIGHGGRD---LANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDE 79 (177)
T ss_dssp --------CCTTTSCEEEEEEEEEECCC--------CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTH
T ss_pred CHHHHHCCCCCCCCCEEEEEEEECCCCHHHHH---HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEHH
T ss_conf 12232078998568467799997588833560---999999999971995050104566554010279825899997388
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 28999999999876775204688711015777314330111006875401468855435999804489689999999808
Q gi|254780249|r 101 NMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFG 180 (185)
Q Consensus 101 ~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g 180 (185)
+||+||++|+++++|++ ++||++|||+|||+||++|||++||++.+++||||||+|++.++.+|+.+++..+
T Consensus 80 ~m~~FL~kll~~v~~~~--------k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~GmdIti~t~~~g~r~a~r~~~~~~ 151 (177)
T 1vq8_D 80 MAEEFLQTALPLAELAT--------SQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRS 151 (177)
T ss_dssp HHHHHHHHHGGGSCCCG--------GGBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCC
T ss_pred HHHHHHHHHHHHCCCCC--------CCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 89999999852248885--------4548986488782788336644204667720117999958898089999999736
Q ss_pred CCCC
Q ss_conf 9868
Q gi|254780249|r 181 FPFP 184 (185)
Q Consensus 181 ~Pf~ 184 (185)
+||+
T Consensus 152 ip~~ 155 (177)
T 1vq8_D 152 IPTK 155 (177)
T ss_dssp CCGG
T ss_pred CCCC
T ss_conf 9854