HHSEARCH alignment of GI: 254780249 and SCOP domain: d2zjrd1

Alignment
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=0  Score=466.42  Aligned_cols=177  Identities=56%  Similarity=0.983  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             18999999999999998269982228604499997457875653789999999877653896135412376421115589
Q gi|254780249|r    9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG   88 (185)
Q Consensus         9 RLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG   88 (185)
                      |||+||+++|+++|+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|+.++||++|++||+|+|
T Consensus         1 rLk~~Y~~~i~~~L~~k~~~~N~m~vPkleKIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksi~~fklrkg   80 (177)
T d2zjrd1           1 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQG   80 (177)
T ss_dssp             CCSHHHHTTTHHHHHTTSCCSCSSSSCCCCEEECBCCCCSSSCCTTHHHHHHHHHHHHHSSCCBCCCCCSCCCSSSCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             90799999999999998589981006615699996788964331689999999998761897189644643120031179


Q ss_pred             CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             86288999603428999999999876775204688711015777314330111006875401468855435999804489
Q gi|254780249|r   89 MPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS  168 (185)
Q Consensus        89 ~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~  168 (185)
                      +|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+++|||++||.+++++||||||||||++
T Consensus        81 ~piG~kvTLRg~~my~FL~kli~~vlprirdf~G~~~~~fd~~gn~~fGi~e~~~FpEi~~d~~~~i~G~~ItivTsa~~  160 (177)
T d2zjrd1          81 MPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKT  160 (177)
T ss_dssp             CCCCCBCEECSHHHHHHHHHHHHTTTTSCTTCCCCCCSCCSTTTCCEECCCCSTTCSSCCGGGSSSCCCCBEEEECCCSS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             82799998444129999999998633100023455655667676587542564315434556557858716999972399


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             68999999980898689
Q gi|254780249|r  169 DREAKYLLTLFGFPFPK  185 (185)
Q Consensus       169 ~~ea~~Lls~~g~Pf~k  185 (185)
                      ++||++|||+|||||+|
T Consensus       161 ~~e~~~Ll~~~g~Pf~~  177 (177)
T d2zjrd1         161 DEEARALLQSMGLPFRK  177 (177)
T ss_dssp             HHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             89999999984998069


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Deinococcus radiodurans [TaxId: 1299]