PSIBLAST alignment of GI: 254780249 and protein with PDB id: 1mji
>gi|28373675|pdb|1MJI|A Chain A, Detailed Analysis Of Rna-Protein Interactions Within The Bacterial Ribosomal Protein L55S RRNA COMPLEX Length = 182
>gi|28373676|pdb|1MJI|B Chain B, Detailed Analysis Of Rna-Protein Interactions Within The Bacterial Ribosomal Protein L55S RRNA COMPLEX Length = 182
Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats.
Identities = 94/176 (53%), Positives = 131/176 (74%)
Query: 10 LKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQ 69
LK++Y +R + + F Y+NV ++P++EKVV+N G+GE+ D++ E AA +LALITGQ
Sbjct: 7 LKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQ 66
Query: 70 KPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFD 129
KP +TRA++SI+ FKLR GMPIG +VTLR + FL++L+N+ +PRIRDF GLN SFD
Sbjct: 67 KPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRXWIFLEKLLNVALPRIRDFRGLNPNSFD 126
Query: 130 GSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
G GN++ G+RE ++FPEI YD VD + G DI++ TT +D EA+ LL L GFPF K
Sbjct: 127 GRGNYNLGLREQLIFPEITYDMVDALRGXDIAVVTTAETDEEARALLELLGFPFRK 182