PSIBLAST alignment of GI: 254780249 and protein with PDB id: 1vsa
gi|149240890|pdb|1VSA|E Chain E, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 182
>gi|160285432|pdb|1VSP|E Chain E, Interactions And Dynamics Of The Shine-Dalgarno Helix In The 70s Ribosome. This File, 1vsp, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2qnh Length = 182
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 96/176 (54%), Positives = 133/176 (75%)
Query: 10 LKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQ 69
LK++Y +R + + F Y+NV ++P++EKVV+N G+GE+ D++ E AA +LALITGQ
Sbjct: 7 LKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQ 66
Query: 70 KPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFD 129
KP +TRA++SI+ FKLR GMPIG +VTLR M+ FL++L+N+ +PRIRDF GLN SFD
Sbjct: 67 KPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFD 126
Query: 130 GSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
G GN++ G+RE ++FPEI YD VD + GMDI++ TT +D EA+ LL L GFPF K
Sbjct: 127 GRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK 182