RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5
[Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA
binding protein; 1.80A {Geobacillus stearothermophilus}
(A:)
Length = 179
Score = 236 bits (604), Expect = 1e-63
Identities = 100/178 (56%), Positives = 139/178 (78%)
Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67
RLK++Y + A+ +F+YK++MQ+PKIEK+V+NMGVG+++ + K +SA +L LI
Sbjct: 2 NRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIA 61
Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127
GQ+PV+TRA++SIAGF+LR GMPIG KVTLRG MY+FLD+LI++ +PR RDF G++ +S
Sbjct: 62 GQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKS 121
Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
FDG GN++ GI+E ++FPEI+YDKV+ V GMDI I TT +D EA+ LL L G PF K
Sbjct: 122 FDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK 179
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} (H:)
Length = 220
Score = 233 bits (595), Expect = 1e-62
Identities = 92/183 (50%), Positives = 129/183 (70%)
Query: 3 DCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAAD 62
+ + RLK Y ++ +++EFSY N++++PK+ K+VVN G+G++ ++K ++A +
Sbjct: 12 EAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINE 71
Query: 63 LALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHG 122
LALITGQ+PV T+A+ SIAGFK+R GM +G VTLRG MY FLDRLIN+ +PR RDF G
Sbjct: 72 LALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQG 131
Query: 123 LNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFP 182
+N SFDG GN+S G RE VFPEI + V GMD+ I TT ++D+EA LL+L G P
Sbjct: 132 VNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMP 191
Query: 183 FPK 185
F +
Sbjct: 192 FRE 194
>3i1n_F 50S ribosomal protein L5; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1vs8_F 1vs6_F 3i1p_F 3i1r_F
3i1t_F 3i20_F 3i22_F 2qam_F* 1p85_D 1p86_D 2awb_F 2aw4_F
2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F
2qbg_F ... (F:)
Length = 179
Score = 231 bits (591), Expect = 4e-62
Identities = 102/178 (57%), Positives = 138/178 (77%)
Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67
+L Y + + + EF+Y +VMQ+P++EK+ +NMGVGE+IAD K ++AAADLA I+
Sbjct: 2 AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAIS 61
Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127
GQKP+IT+AR+S+AGFK+R G PIG KVTLRG M++F +RLI + +PRIRDF GL+++S
Sbjct: 62 GQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKS 121
Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
FDG GN+S G+RE I+FPEI+YDKVD V G+DI+I TT +SD E + LL F FPF K
Sbjct: 122 FDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK 179
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA
complex, ribosome; 2.50A {Thermus thermophilus} (A:)
Length = 182
Score = 230 bits (588), Expect = 9e-62
Identities = 94/180 (52%), Positives = 132/180 (73%)
Query: 6 YEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLAL 65
+ LK++Y +R + + F Y+NV ++P++EKVV+N G+GE+ D++ E AA +LAL
Sbjct: 3 LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELAL 62
Query: 66 ITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNS 125
ITGQKP +TRA++SI+ FKLR GMPIG +VTLR + FL++L+N+ +PRIRDF GLN
Sbjct: 63 ITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRXWIFLEKLLNVALPRIRDFRGLNP 122
Query: 126 RSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
SFDG GN++ G+RE ++FPEI YD VD + G DI++ TT +D EA+ LL L GFPF K
Sbjct: 123 NSFDGRGNYNLGLREQLIFPEITYDMVDALRGXDIAVVTTAETDEEARALLELLGFPFRK 182
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein
complex, RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} (D:)
Length = 177
Score = 200 bits (510), Expect = 1e-52
Identities = 56/165 (33%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 21 AMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSI 80
+ + + M+ P+IEKVVV+MG+G D A L ITGQ PV T+A+R++
Sbjct: 3 SESESGGDFHEMREPRIEKVVVHMGIGHGGRDLANA---EDILGEITGQMPVRTKAKRTV 59
Query: 81 AGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIRE 140
F +R G PIG KVTLR +FL + + FD +GNFSFG+ E
Sbjct: 60 GEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATS--------QFDDTGNFSFGVEE 111
Query: 141 HIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
H FP YD + G+D+++ R AK P
Sbjct: 112 HTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKH 156
>2noq_H 60S ribosomal protein L11-B; IRES RNA, ribosome,
translation, internal initiation; 7.30A {Saccharomyces
cerevisiae} PDB: 1s1i_J 2zkr_d (H:)
Length = 165
Score = 190 bits (484), Expect = 1e-49
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGM 89
N M+ KIEK+V+N+ VGES + A+ L ++GQ PV ++AR ++ F +R
Sbjct: 1 NPMRDLKIEKLVLNISVGES---GDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNE 57
Query: 90 PIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINY 149
I VT+RG + L+R + + ++RD +F +GNF FGI EHI I Y
Sbjct: 58 KIAVHVTVRGPKAEEILERGLKVKEYQLRDR------NFSATGNFGFGIDEHI-DLGIKY 110
Query: 150 DKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
D + GMD + R +
Sbjct: 111 DPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSH 146
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen
homolog 2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} (A:)
Length = 89
Score = 29.1 bits (65), Expect = 0.36
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 16/58 (27%)
Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65
+ + P +V V V +KK A+ AA+ L
Sbjct: 13 AQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAML 70
>3c25_A Noti Restriction Endonuclease Bound To Cognate Dna {Nocardia
otitidiscaviarum} (A:)
Length = 383
Score = 27.8 bits (61), Expect = 1.0
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 45 GVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG--MPIGTKVTLRGTNM 102
G G + A AD A+ G + + R +A F+ + G + I + +
Sbjct: 100 GYGPTEPLQFIAAPTLADQAVRDGIREWLDRGVHVVAYFQEKLGGELSISKTDSSPEFSF 159
Query: 103 YDFLDRLI-NMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDIS 161
L + +P+I+ + L ++ D G+ + + V G+D
Sbjct: 160 DWTLAEVESIYPVPKIKRYGVLEIQTMDFHGS---------YKHAVGAIDIALVEGIDFH 210
Query: 162 ICTTTRSDREAKY 174
T + R A
Sbjct: 211 GWLPTPAGRAALS 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 27.4 bits (61), Expect = 1.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 79 SIAGFKLRTGMPIGTKVTL---RGTNMYDFLDR 108
S+A M I + V + RG M + R
Sbjct: 1 SLADV-----MSIESLVEVVFYRGMTMQVAVPR 28
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA
complex, protein-RNA interactions, RNA-bining protein;
1.90A {Xenopus laevis} (A:)
Length = 69
Score = 27.4 bits (61), Expect = 1.2
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65
QE + + ++P+ V V SK+ A+ AA+ L
Sbjct: 7 QELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLL 64
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} (A:)
Length = 97
Score = 27.2 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65
V V+ E+ SKK A+ A L
Sbjct: 51 SVDVDGTTYEASGPSKKTAKLHVAVKVL 78
>2dix_A Interferon-inducible double stranded RNA- dependent
protein kinase activator A; structure genomics, DSRM
domain, hypothetical protein PRKRA; NMR {Homo sapiens}
(A:)
Length = 84
Score = 27.1 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65
+V V SKK A+ AA+ A+
Sbjct: 44 RVTVGDITCTGEGTSKKLAKHRAAEAAI 71
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding
domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR
{Homo sapiens} (A:)
Length = 89
Score = 27.2 bits (60), Expect = 1.4
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 16/58 (27%)
Query: 24 QEFSYKNVMQIPK---------------IEKVVVNMGVGESIADSKK-AESAAADLAL 65
QE + ++P+ V + SKK A+ AA L
Sbjct: 23 QELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 80
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference,
endonucleolytic cleavage, hydrolase/RNA complex; 1.70A
{Aquifex aeolicus} (A:149-221)
Length = 73
Score = 27.1 bits (60), Expect = 1.5
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65
QE + K + P+ + + SKK AE AA+ +
Sbjct: 9 QEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELI 66
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing,
RNA-binding protein, hydrolase; NMR {Rattus norvegicus}
(A:)
Length = 73
Score = 27.0 bits (60), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65
V VN V E +KK A+ AA+ AL
Sbjct: 39 SVEVNGQVFEGSGPTKKKAKLHAAEKAL 66
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure,
protein/RNA, protein DSRBD, RNA hairpin; NMR
{Drosophila melanogaster} (A:)
Length = 76
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMG--VGESIADSKK-AESAAADLAL 65
E ++ + + + K +G V E + KK ++ AA+ L
Sbjct: 15 EIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKML 70
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
(A:184-315)
Length = 132
Score = 26.5 bits (58), Expect = 2.2
Identities = 6/72 (8%), Positives = 19/72 (26%)
Query: 48 ESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLD 107
+ + S + E A + + G+ + + + +G
Sbjct: 1 QKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDM 60
Query: 108 RLINMGMPRIRD 119
++ G +
Sbjct: 61 QVGQTGKIVAPE 72
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} (A:22-300)
Length = 279
Score = 26.5 bits (57), Expect = 2.2
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 33 QIPKIEKVVVNMGVGESIADSKKAESAAADLALIT--GQKPVIT-----RARRSIAGFKL 85
+ + +V+ G G ++ + A D+ L+ G PV+ + + +
Sbjct: 1 RRFVGKTLVIKYG-GNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSI 59
Query: 86 RTGMPIGTKVTLRGTN--MYDFLDRLINMGMPRIRDFHGLNSRSFDGS 131
+ G +VT T + L +N + + + HG ++ G
Sbjct: 60 ESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGK 107
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA
complex; HET: SAH; 3.10A {Arabidopsis thaliana}
(A:354-363,A:524-698)
Length = 185
Score = 26.7 bits (58), Expect = 2.3
Identities = 18/56 (32%), Positives = 20/56 (35%)
Query: 25 EFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSI 80
EF P IE V M VGE + AA L L G V R+ S
Sbjct: 107 EFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSE 162
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase,
gene regulation, nuclear protein; NMR {Homo sapiens}
(A:29-85)
Length = 57
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 36 KIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARR 78
+ + G G SI ++AE AA AL P +
Sbjct: 17 YFKGERIGCGKGPSI---QQAEMGAAMDALEKYNFPQMHHHHH 56
>1x49_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} (A:)
Length = 97
Score = 26.1 bits (57), Expect = 3.2
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMG---VGESIADSKK-AESAAADLAL 65
+Y A+ + + + V + E+ SK+ A +AAA LA+
Sbjct: 22 KYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAV 78
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing,
RNA-binding protein, hydrolase; NMR {Rattus norvegicus}
(A:)
Length = 71
Score = 25.9 bits (57), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65
VVV+ E +KK A++ AA AL
Sbjct: 36 SVVVDGQFFEGSGRNKKLAKARAAQSAL 63
>1uil_A Double-stranded RNA-binding motif; structural genomics,
DSRM, riken structural genomics/proteomics initiative,
RSGI RNA binding protein; NMR {Mus musculus} (A:)
Length = 113
Score = 25.7 bits (56), Expect = 3.8
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 9 RLKKEY-CLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLAL 65
+++ EY ++ + F + + I ++ + + G + K A + A +
Sbjct: 40 KIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNK---KLAAQSCALSLV 94
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad,
Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} (A:350-514)
Length = 165
Score = 25.6 bits (55), Expect = 4.4
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 99 GTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFG--IREHIVFPEINYDKVDCVL 156
G +Y L + RDF L + S S +F + I P Y V
Sbjct: 83 GFAVYQVPRELAGQPVHLKRDFF-LANASRAQSEHFINLREVSNRIRLPPGEY----IV- 136
Query: 157 GMDISICTTTRSDREAKYLLTLF 179
+ +T ++E +LL F
Sbjct: 137 -----VPSTFEPNKEGDFLLRFF 154
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR
{Saccharomyces cerevisiae} (A:)
Length = 94
Score = 25.7 bits (56), Expect = 4.4
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 5/73 (6%)
Query: 13 EYCLRIREAMQQEFSYKNVMQIPK--IEKVVVNMGV-GESIADSKK-AESAAADLAL-IT 67
+ K P +E V + V G + + K A AA+ AL
Sbjct: 14 SLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDK 73
Query: 68 GQKPVITRARRSI 80
+ R +
Sbjct: 74 KMLDFYAKQRAAA 86
>2f40_A Hypothetical protein PF1455; protein structure prediction,
residual dipolar couplings, pyrococcus furious,
simulated annealing; NMR {Pyrococcus furiosus dsm 3638}
(A:)
Length = 96
Score = 25.3 bits (55), Expect = 4.6
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 5 KYEPRLKKEYCLRIREAMQQEFSYKNVMQ 33
K + + +E + ++E ++ S+ NV++
Sbjct: 65 KLKGEVIEEKEITLQELIEGSLSWNNVLR 93
>3da4_A Colicin-M; phosphatase, antibiotic, antimicrobial,
bacteriocin, plasmid, TONB box; 1.70A {Escherichia coli}
PDB: 3da3_A (A:)
Length = 279
Score = 25.3 bits (55), Expect = 5.1
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 30 NVMQIPKIEKVVVNMGVGESIADSK 54
+ M+I +I+ ++ + VG +K
Sbjct: 156 SPMKINQIKDIIKSGVVGTFPVSTK 180
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} (A:493-576)
Length = 84
Score = 24.4 bits (53), Expect = 9.7
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 79 SIAGFKLRTGMPIGTKVTLRGTNMYD 104
I G +G +VT+ G
Sbjct: 4 IIGHVGPMMG-QVGHQVTIDGEGFGT 28
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.140 0.410
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,423,020
Number of extensions: 62342
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 30
Length of query: 185
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 102
Effective length of database: 2,150,234
Effective search space: 219323868
Effective search space used: 219323868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)