RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5
[Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 215 bits (549), Expect = 2e-57
Identities = 96/179 (53%), Positives = 134/179 (74%)
Query: 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALI 66
+ LK++Y +R + + F Y+NV ++P++EKVV+N G+GE+ D++ E AA +LALI
Sbjct: 2 DVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALI 61
Query: 67 TGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSR 126
TGQKP +TRA++SI+ FKLR GMPIG +VTLR M+ FL++L+N+ +PRIRDF GLN
Sbjct: 62 TGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPN 121
Query: 127 SFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
SFDG GN++ G+RE ++FPEI YD VD + GMDI++ TT +D EA+ LL L GFPF K
Sbjct: 122 SFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK 180
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 208 bits (530), Expect = 3e-55
Identities = 100/178 (56%), Positives = 139/178 (78%)
Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67
RLK++Y + A+ +F+YK++MQ+PKIEK+V+NMGVG+++ + K +SA +L LI
Sbjct: 2 NRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIA 61
Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127
GQ+PV+TRA++SIAGF+LR GMPIG KVTLRG MY+FLD+LI++ +PR RDF G++ +S
Sbjct: 62 GQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKS 121
Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
FDG GN++ GI+E ++FPEI+YDKV+ V GMDI I TT +D EA+ LL L G PF K
Sbjct: 122 FDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK 179
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 205 bits (523), Expect = 2e-54
Identities = 100/177 (56%), Positives = 134/177 (75%)
Query: 9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITG 68
+LK +Y ++R A+ Q+F Y +VM +P+IEK+VVN G+G S DSK + AA +LALIT
Sbjct: 1 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITL 60
Query: 69 QKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSF 128
QKP+IT+A++SI+ FKLR GMP+G KVTLRG MY FL++LIN+G+PRIRDF G+N +F
Sbjct: 61 QKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAF 120
Query: 129 DGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
DG GN++ GI+E ++FPEI YD VD GMDI+I TT ++D EA+ LL G PF K
Sbjct: 121 DGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK 177
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 202 bits (515), Expect = 2e-53
Identities = 102/177 (57%), Positives = 138/177 (77%)
Query: 9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITG 68
+L Y + + + EF+Y +VMQ+P++EK+ +NMGVGE+IAD K ++AAADLA I+G
Sbjct: 1 KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISG 60
Query: 69 QKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSF 128
QKP+IT+AR+S+AGFK+R G PIG KVTLRG M++F +RLI + +PRIRDF GL+++SF
Sbjct: 61 QKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSF 120
Query: 129 DGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
DG GN+S G+RE I+FPEI+YDKVD V G+DI+I TT +SD E + LL F FPF K
Sbjct: 121 DGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK 177
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 164 bits (416), Expect = 5e-42
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGM 89
+ M+ P+IEKVVV+MG+G D AE L ITGQ PV T+A+R++ F +R G
Sbjct: 2 HEMREPRIEKVVVHMGIGHGGRDLANAED---ILGEITGQMPVRTKAKRTVGEFDIREGD 58
Query: 90 PIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINY 149
PIG KVTLR +FL + + + FD +GNFSFG+ EH FP Y
Sbjct: 59 PIGAKVTLRDEMAEEFLQTALPLAEL--------ATSQFDDTGNFSFGVEEHTEFPSQEY 110
Query: 150 DKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
D + G+D+++ R AK P
Sbjct: 111 DPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKH 146
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 27.3 bits (59), Expect = 0.77
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 16/80 (20%)
Query: 92 GTKVTLRGTNMYDF------------LDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIR 139
G GTN Y + + G+ +R + + + G F
Sbjct: 16 GKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKL 75
Query: 140 E----HIVFPEINYDKVDCV 155
I +D V
Sbjct: 76 SATGSTINTGADGLQTLDYV 95
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
(2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 128
Score = 26.6 bits (58), Expect = 1.2
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVNM---GVGESIADSKKAESAAADLAL 65
E+C R + + + + V V K AE AA + L
Sbjct: 34 EWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCL 89
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 68
Score = 26.1 bits (57), Expect = 1.8
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65
QE + K + P+ + + SKK AE AA+ +
Sbjct: 7 QEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELI 64
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 24.8 bits (54), Expect = 4.9
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESI 50
C E + + + Q +I K + N G SI
Sbjct: 159 CANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSI 205
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525
{Helicobacter pylori [TaxId: 210]}
Length = 323
Score = 24.8 bits (53), Expect = 5.1
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 85 LRTGMPIGTKVTLRGTNMYDFLDRLINMGMP 115
L +G GT TL + + RL NM
Sbjct: 256 LCSGHK-GTLTTLHAGSSEEAFIRLANMSSS 285
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 71
Score = 24.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65
VVV+ E +KK A++ AA AL
Sbjct: 36 SVVVDGQFFEGSGRNKKLAKARAAQSAL 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.410
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,247
Number of extensions: 32415
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 16
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)