RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62] (185 letters) >d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Length = 180 Score = 215 bits (549), Expect = 2e-57 Identities = 96/179 (53%), Positives = 134/179 (74%) Query: 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALI 66 + LK++Y +R + + F Y+NV ++P++EKVV+N G+GE+ D++ E AA +LALI Sbjct: 2 DVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALI 61 Query: 67 TGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSR 126 TGQKP +TRA++SI+ FKLR GMPIG +VTLR M+ FL++L+N+ +PRIRDF GLN Sbjct: 62 TGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPN 121 Query: 127 SFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 SFDG GN++ G+RE ++FPEI YD VD + GMDI++ TT +D EA+ LL L GFPF K Sbjct: 122 SFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK 180 >d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Length = 179 Score = 208 bits (530), Expect = 3e-55 Identities = 100/178 (56%), Positives = 139/178 (78%) Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67 RLK++Y + A+ +F+YK++MQ+PKIEK+V+NMGVG+++ + K +SA +L LI Sbjct: 2 NRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIA 61 Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127 GQ+PV+TRA++SIAGF+LR GMPIG KVTLRG MY+FLD+LI++ +PR RDF G++ +S Sbjct: 62 GQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKS 121 Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 FDG GN++ GI+E ++FPEI+YDKV+ V GMDI I TT +D EA+ LL L G PF K Sbjct: 122 FDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK 179 >d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Length = 177 Score = 205 bits (523), Expect = 2e-54 Identities = 100/177 (56%), Positives = 134/177 (75%) Query: 9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITG 68 +LK +Y ++R A+ Q+F Y +VM +P+IEK+VVN G+G S DSK + AA +LALIT Sbjct: 1 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITL 60 Query: 69 QKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSF 128 QKP+IT+A++SI+ FKLR GMP+G KVTLRG MY FL++LIN+G+PRIRDF G+N +F Sbjct: 61 QKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAF 120 Query: 129 DGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 DG GN++ GI+E ++FPEI YD VD GMDI+I TT ++D EA+ LL G PF K Sbjct: 121 DGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK 177 >d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Length = 177 Score = 202 bits (515), Expect = 2e-53 Identities = 102/177 (57%), Positives = 138/177 (77%) Query: 9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITG 68 +L Y + + + EF+Y +VMQ+P++EK+ +NMGVGE+IAD K ++AAADLA I+G Sbjct: 1 KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISG 60 Query: 69 QKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSF 128 QKP+IT+AR+S+AGFK+R G PIG KVTLRG M++F +RLI + +PRIRDF GL+++SF Sbjct: 61 QKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSF 120 Query: 129 DGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 DG GN+S G+RE I+FPEI+YDKVD V G+DI+I TT +SD E + LL F FPF K Sbjct: 121 DGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK 177 >d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 165 Score = 164 bits (416), Expect = 5e-42 Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 11/156 (7%) Query: 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGM 89 + M+ P+IEKVVV+MG+G D AE L ITGQ PV T+A+R++ F +R G Sbjct: 2 HEMREPRIEKVVVHMGIGHGGRDLANAED---ILGEITGQMPVRTKAKRTVGEFDIREGD 58 Query: 90 PIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINY 149 PIG KVTLR +FL + + + FD +GNFSFG+ EH FP Y Sbjct: 59 PIGAKVTLRDEMAEEFLQTALPLAEL--------ATSQFDDTGNFSFGVEEHTEFPSQEY 110 Query: 150 DKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 D + G+D+++ R AK P Sbjct: 111 DPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKH 146 >d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Length = 344 Score = 27.3 bits (59), Expect = 0.77 Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 16/80 (20%) Query: 92 GTKVTLRGTNMYDF------------LDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIR 139 G GTN Y + + G+ +R + + + G F Sbjct: 16 GKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKL 75 Query: 140 E----HIVFPEINYDKVDCV 155 I +D V Sbjct: 76 SATGSTINTGADGLQTLDYV 95 >d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 Score = 26.6 bits (58), Expect = 1.2 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 3/56 (5%) Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVNM---GVGESIADSKKAESAAADLAL 65 E+C R + + + + V V K AE AA + L Sbjct: 34 EWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCL 89 >d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 Score = 26.1 bits (57), Expect = 1.8 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 16/58 (27%) Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65 QE + K + P+ + + SKK AE AA+ + Sbjct: 7 QEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELI 64 >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Length = 336 Score = 24.8 bits (54), Expect = 4.9 Identities = 9/47 (19%), Positives = 14/47 (29%) Query: 4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESI 50 C E + + + Q +I K + N G SI Sbjct: 159 CANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSI 205 >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Length = 323 Score = 24.8 bits (53), Expect = 5.1 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%) Query: 85 LRTGMPIGTKVTLRGTNMYDFLDRLINMGMP 115 L +G GT TL + + RL NM Sbjct: 256 LCSGHK-GTLTTLHAGSSEEAFIRLANMSSS 285 >d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 Score = 24.0 bits (52), Expect = 8.7 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65 VVV+ E +KK A++ AA AL Sbjct: 36 SVVVDGQFFEGSGRNKKLAKARAAQSAL 63 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.140 0.410 Gapped Lambda K H 0.267 0.0572 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 704,247 Number of extensions: 32415 Number of successful extensions: 83 Number of sequences better than 10.0: 1 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 16 Length of query: 185 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 105 Effective length of database: 1,309,196 Effective search space: 137465580 Effective search space used: 137465580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.4 bits)