HHsearch alignment for GI: 254780250 and conserved domain: PRK05609
>PRK05609 nusG transcription antitermination protein NusG; Validated.
Probab=96.38 E-value=0.007 Score=35.96 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 22658699998437888646999997469989990
Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
T Consensus 128 ~~~~Gd~V~I~~GPf~g~~g~v~~~d~~k~Rv~V~ 162 (183)
T PRK05609 128 DFEVGEVVRVTDGPFADFNGTVEEVDYEKSKLKVL 162 (183)
T ss_pred CCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 32279899993678999689999983878999999