HHsearch alignment for GI: 254780250 and conserved domain: PRK09014
>PRK09014 rfaH transcriptional activator RfaH; Provisional.
Probab=93.92 E-value=0.13 Score=29.15 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEE
Q ss_conf 26586999984378886469999974699899906059743
Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKR 44 (102)
Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kk 44 (102)
T Consensus 110 ~~~Gd~V~I~~GPf~g~~g~v~~~~~~-~R~~vl-l~~lgr 148 (162)
T PRK09014 110 PKPGDKVIITEGAFEGIQAIYTEPDGE-ARSILL-LNLLNK 148 (162)
T ss_pred CCCCCEEEEEECCCCCCEEEEEEECCC-CCEEEE-EEECCC
T ss_conf 999999999437999808999988687-878999-620399