HHsearch alignment for GI: 254780250 and conserved domain: PRK09014

>PRK09014 rfaH transcriptional activator RfaH; Provisional.
Probab=93.92  E-value=0.13  Score=29.15  Aligned_cols=39  Identities=18%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEE
Q ss_conf             26586999984378886469999974699899906059743
Q gi|254780250|r    4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKR   44 (102)
Q Consensus         4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kk   44 (102)
T Consensus       110 ~~~Gd~V~I~~GPf~g~~g~v~~~~~~-~R~~vl-l~~lgr  148 (162)
T PRK09014        110 PKPGDKVIITEGAFEGIQAIYTEPDGE-ARSILL-LNLLNK  148 (162)
T ss_pred             CCCCCEEEEEECCCCCCEEEEEEECCC-CCEEEE-EEECCC
T ss_conf             999999999437999808999988687-878999-620399