HHsearch alignment of GI: 254780250 and MMDB domain: 1nz9_A_

>1nz9_A (A:) Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus}

Probab=96.94  E-value=0.0013  Score=39.61  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf             2658699998437888646999997469989990
Q gi|254780250|r    4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ   37 (102)
Q Consensus         4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe   37 (102)
                      +..||.|.|++|...|-.|+|.++++.++++.|.
T Consensus         5 ~~~Gd~V~I~~GpF~g~~G~V~~id~~k~~v~V~   38 (58)
T 1nz9_A            5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKVM   38 (58)
T ss_dssp             CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEECCCCCCCCEEEEEEEECCCCEEEEE
T ss_conf             1599999992468999889999990889999999