HHsearch results for GI: 254780250 and protein with PDBid: 1nz9_A

>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4

Probab=96.68  E-value=0.0019  Score=37.84  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf             2658699998437888646999997469989990
Q gi|254780250|r    4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ   37 (102)
Q Consensus         4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe   37 (102)
                      +..||.|.|++|...|-.|+|.++++.+.++.|.
T Consensus         5 F~~Gd~V~V~~GpF~g~~g~V~~i~~~~~rv~Vl   38 (58)
T 1nz9_A            5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKVM   38 (58)
T ss_dssp             CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             0699999990368999899999991889999999