HHsearch results for GI: 254780250 and protein with PDBid: 2j01_Y
>2j01_Y 50S ribosomal protein L24; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.1 PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=100.00 E-value=1.3e-42 Score=250.59 Aligned_cols=101 Identities=42% Similarity=0.631 Sum_probs=96.3
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECC-CCCEEE
Q ss_conf 7226586999984378886469999974699899906059743205777-65651799970468665788978-996228
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDK-DGKQVR 79 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~-~~k~tr 79 (102)
++|++||+|+||||+||||+|+|++|++++|+|+|||+|+++||+||++ +++|||+++|+|||+|||||+|| +++|||
T Consensus 5 ~kikkGD~V~VisGkdKGK~G~Vl~V~~~~~~ViVeGvN~~kkh~K~~~~~~~Ggii~~E~PIh~SNV~lvd~~~~k~tr 84 (110)
T 2j01_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTR 84 (110)
T ss_dssp CCSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTSCCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEECSSSSCCCCC
T ss_pred CEEECCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCEEHHHEEEEECCCCCCEE
T ss_conf 48757999999168889971789999898999999783756530267777889868999836726767898288999579
Q ss_pred EEEEE-ECCEEEEEECCCCCEECC
Q ss_conf 89999-999799998156877159
Q gi|254780250|r 80 VGFSF-VDGKKIRIAKRSGEPIDG 102 (102)
Q Consensus 80 v~~~~-~dG~kvRv~kksg~~id~ 102 (102)
++|++ +||+|+|||++||++||-
T Consensus 85 v~~k~~e~G~kvRv~kksg~~id~ 108 (110)
T 2j01_Y 85 VRKKFLENGKKIRVCAKCGGALDT 108 (110)
T ss_dssp EECTTSSCEECCTTTCC-------
T ss_pred EEEEECCCCCEEEEEECCCCCCCC
T ss_conf 999996699499999457987367