Query gi|254780250|ref|YP_003064663.1| 50S ribosomal protein L24 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 102 No_of_seqs 104 out of 1662 Neff 5.0 Searched_HMMs 23785 Date Tue May 24 03:47:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780250.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ftc_N Mitochondrial ribosomal 100.0 1.1E-40 4.2E-45 240.1 12.4 94 7-100 1-96 (96) 2 2zjr_R 50S ribosomal protein L 100.0 2.7E-42 0 248.9 0.2 100 2-101 14-115 (115) 3 3bbo_W Ribosomal protein L24; 100.0 1.5E-42 0 250.2 -5.0 100 2-101 67-169 (191) 4 2j01_Y 50S ribosomal protein L 100.0 1.3E-42 0 250.6 -6.9 101 2-102 5-108 (110) 5 3ofq_U 50S ribosomal protein L 100.0 1.6E-41 0 244.7 -7.1 98 2-100 2-102 (102) 6 1vq8_T 50S ribosomal protein L 99.9 2.3E-24 9.8E-29 151.4 6.3 72 2-83 41-113 (120) 7 2wwb_L 60S ribosomal protein L 99.9 2.5E-22 1.1E-26 140.4 5.1 64 2-75 48-111 (127) 8 2zkr_t 60S ribosomal protein L 99.3 1E-11 4.3E-16 82.8 7.6 63 2-74 47-110 (145) 9 1nz9_A Transcription antitermi 96.7 0.0019 8E-08 37.8 4.8 34 4-37 5-38 (58) 10 2ckk_A KIN17; beta barrel, rib 96.3 0.0044 1.9E-07 35.9 4.6 33 5-37 72-104 (127) 11 2jvv_A Transcription antitermi 96.0 0.0073 3.1E-07 34.7 4.6 35 3-37 127-161 (181) 12 2do3_A Transcription elongatio 95.9 0.0071 3E-07 34.7 4.4 32 2-35 16-47 (69) 13 2joy_A 50S ribosomal protein L 94.0 0.04 1.7E-06 30.7 3.6 37 1-38 1-37 (96) 14 1m1h_A Transcription antitermi 93.9 0.0081 3.4E-07 34.4 0.0 35 3-37 194-228 (248) 15 2e6z_A Transcription elongatio 88.1 0.19 8.1E-06 27.0 2.0 31 4-36 8-38 (59) 16 3kbg_A 30S ribosomal protein S 68.2 4.6 0.00019 19.5 3.7 29 3-31 138-166 (213) 17 2e70_A Transcription elongatio 66.8 5.5 0.00023 19.0 3.9 33 6-38 20-52 (71) 18 2zkr_q 60S ribosomal protein L 63.2 2.9 0.00012 20.6 1.9 54 1-54 31-104 (160) 19 2zzd_A Thiocyanate hydrolase s 52.1 12 0.00052 17.2 3.7 25 3-27 36-70 (126) 20 3dcl_A TM1086; SAD, structural 46.2 15 0.00065 16.6 5.0 33 5-37 85-117 (284) 21 1vq8_Q 50S ribosomal protein L 38.1 21 0.00087 15.9 3.9 34 1-36 31-74 (96) 22 1ugp_B NitrIle hydratase beta 37.5 21 0.00089 15.9 3.7 26 3-28 138-173 (226) 23 3kw2_A Probable R-RNA methyltr 34.9 23 0.00099 15.6 4.0 37 2-38 31-67 (257) 24 3hht_B NitrIle hydratase beta 34.5 24 0.001 15.6 3.7 52 3-71 141-202 (229) 25 3jyw_Q 60S ribosomal protein L 29.8 8.4 0.00035 18.1 -0.2 37 1-37 30-76 (116) 26 1b34_A Protein (small nuclear 26.9 28 0.0012 15.2 2.1 24 9-32 14-37 (119) 27 2exd_A NFED short homolog; mem 24.8 36 0.0015 14.6 2.4 24 18-41 17-40 (80) 28 1vhy_A Hypothetical protein HI 21.0 43 0.0018 14.2 3.9 35 2-36 34-68 (257) 29 3a8g_B NitrIle hydratase subun 20.3 44 0.0019 14.1 3.0 23 3-25 122-154 (212) No 1 >2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_N Probab=100.00 E-value=1.1e-40 Score=240.06 Aligned_cols=94 Identities=34% Similarity=0.563 Sum_probs=91.3 Q ss_pred CCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECC-CCCEEEEEEEE- Q ss_conf 8699998437888646999997469989990605974320577765651799970468665788978-99622889999- Q gi|254780250|r 7 GDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDK-DGKQVRVGFSF- 84 (102) Q Consensus 7 GD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~-~~k~trv~~~~- 84 (102) ||+|+||||+||||+|+|++|++++|+|+|||+||++||++|+++++|||+++|+|||+|||||+|| +++|||++|++ T Consensus 1 GD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeGvN~~kkh~k~~~~~~Ggii~~E~pIh~SNV~lvd~~~~k~trv~~~~~ 80 (96) T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFT 80 (96) T ss_pred CCEEEEEECCCCCCCEEEEEEECCCCEEEEECEEEEEEECCCCCCCCCCEEEEECCEEHHHEEEEECCCCCCEEEEEEEC T ss_conf 99999906898997079999998689999946599988258777678878998847873537798088999589999998 Q ss_pred ECCEEEEEECCCCCEE Q ss_conf 9997999981568771 Q gi|254780250|r 85 VDGKKIRIAKRSGEPI 100 (102) Q Consensus 85 ~dG~kvRv~kksg~~i 100 (102) +||+|+|+|++||++| T Consensus 81 edG~KvRv~kksG~~I 96 (96) T 2ftc_N 81 EAGERVRVSTRSGRII 96 (96) T ss_pred CCCCEEEEEECCCCCC T ss_conf 7996999990468789 No 2 >2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Probab=100.00 E-value=2.7e-42 Score=248.86 Aligned_cols=100 Identities=37% Similarity=0.663 Sum_probs=96.4 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECC-CCCEEE Q ss_conf 7226586999984378886469999974699899906059743205777-65651799970468665788978-996228 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDK-DGKQVR 79 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~-~~k~tr 79 (102) ++|++||+|+||||+|||++|+|++|++++|+|+|||+|++++|++|++ +++|||+++|+|||+|||||+|| +++|+| T Consensus 14 ~kikkGD~V~VisGkdKGK~G~Vl~V~~k~n~ViVeGvN~~kkh~Kp~~~~~~Ggii~~E~pIh~SNV~lvdp~~~k~~r 93 (115) T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATR 93 (115) T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCC T ss_pred EEEECCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCEEEEEECCCCCCCCCCCEEEEECCEEHHHEEEECCCCCCCEE T ss_conf 02317999999155789971789999888999999685699985177766788867888836986778888587899528 Q ss_pred EEEEEECCEEEEEECCCCCEEC Q ss_conf 8999999979999815687715 Q gi|254780250|r 80 VGFSFVDGKKIRIAKRSGEPID 101 (102) Q Consensus 80 v~~~~~dG~kvRv~kksg~~id 101 (102) ++|+++||+|+|||++||++|| T Consensus 94 v~~~~~dG~KvR~~kksg~~Id 115 (115) T 2zjr_R 94 VRKQIVDGKKVRVAVASGKTID 115 (115) T ss_dssp CCCCCSCTTSCCCCSSSCCC-- T ss_pred EEEEEECCEEEEEEECCCCCCC T ss_conf 9999929969999925787249 No 3 >3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Probab=100.00 E-value=1.5e-42 Score=250.21 Aligned_cols=100 Identities=31% Similarity=0.531 Sum_probs=95.7 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECC-CCCEEE Q ss_conf 7226586999984378886469999974699899906059743205777-65651799970468665788978-996228 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDK-DGKQVR 79 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~-~~k~tr 79 (102) |+||+||+|+||+|+||||+|+|++|++++|+|+|||+|+++||+||++ +++|||+++|+|||+|||||+|| +++||| T Consensus 67 ~~IKkGD~V~VIsGkDKGK~G~Vl~V~~k~n~ViVeGvN~~kKHvKp~~~~~~GgIi~~E~PIhiSNV~Lvdp~~~k~tR 146 (191) T 3bbo_W 67 RHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADR 146 (191) T ss_dssp CCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCC T ss_pred EECCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEEEEECCCCCCCCCCCEEEEECCCCHHHEEEECCCCCCCEE T ss_conf 00158999999256899943279899867999999696889874177656778852778756607886787688998438 Q ss_pred EEEEE-ECCEEEEEECCCCCEEC Q ss_conf 89999-99979999815687715 Q gi|254780250|r 80 VGFSF-VDGKKIRIAKRSGEPID 101 (102) Q Consensus 80 v~~~~-~dG~kvRv~kksg~~id 101 (102) |+|++ +||+|||||++||++|| T Consensus 147 Vg~k~~edGkKVRv~kktG~~Id 169 (191) T 3bbo_W 147 VGHKILEDVRKVRYLIKTGEIVD 169 (191) T ss_dssp CCCCSSSCCCCCSSSCCSSSCCC T ss_pred EEEEECCCCCEEEEEECCCCCCC T ss_conf 89999779959999925898248 No 4 >2j01_Y 50S ribosomal protein L24; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.1 PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Probab=100.00 E-value=1.3e-42 Score=250.59 Aligned_cols=101 Identities=42% Similarity=0.631 Sum_probs=96.3 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECC-CCCEEE Q ss_conf 7226586999984378886469999974699899906059743205777-65651799970468665788978-996228 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDK-DGKQVR 79 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~-~~k~tr 79 (102) ++|++||+|+||||+||||+|+|++|++++|+|+|||+|+++||+||++ +++|||+++|+|||+|||||+|| +++||| T Consensus 5 ~kikkGD~V~VisGkdKGK~G~Vl~V~~~~~~ViVeGvN~~kkh~K~~~~~~~Ggii~~E~PIh~SNV~lvd~~~~k~tr 84 (110) T 2j01_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTR 84 (110) T ss_dssp CCSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTSCCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEECSSSSCCCCC T ss_pred CEEECCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCEEHHHEEEEECCCCCCEE T ss_conf 48757999999168889971789999898999999783756530267777889868999836726767898288999579 Q ss_pred EEEEE-ECCEEEEEECCCCCEECC Q ss_conf 89999-999799998156877159 Q gi|254780250|r 80 VGFSF-VDGKKIRIAKRSGEPIDG 102 (102) Q Consensus 80 v~~~~-~dG~kvRv~kksg~~id~ 102 (102) ++|++ +||+|+|||++||++||- T Consensus 85 v~~k~~e~G~kvRv~kksg~~id~ 108 (110) T 2j01_Y 85 VRKKFLENGKKIRVCAKCGGALDT 108 (110) T ss_dssp EECTTSSCEECCTTTCC------- T ss_pred EEEEECCCCCEEEEEECCCCCCCC T ss_conf 999996699499999457987367 No 5 >3ofq_U 50S ribosomal protein L24; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 2j28_U* 3fik_U 2wwq_U 3ofr_U* 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3kcr_U 3orb_U* 3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S ... Probab=100.00 E-value=1.6e-41 Score=244.73 Aligned_cols=98 Identities=49% Similarity=0.839 Sum_probs=92.8 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCC-C-CCCCEEEEEEECCCHHHEEEECC-CCCEE Q ss_conf 722658699998437888646999997469989990605974320577-7-65651799970468665788978-99622 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQT-P-NKEAGIISKEASIHLSNLSLIDK-DGKQV 78 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~-~-~~~gGii~~E~pIh~SNV~lvd~-~~k~t 78 (102) +||++||+|+||||+|||++|+|++|+++ |+|+|||+|+++||++|+ + +++|||+++|+|||+|||||+|| +++|| T Consensus 2 akIkkGD~V~VisGkdKGK~G~Vl~v~~~-~rviVeGvN~~kkH~Kp~~~~~~~Ggii~~E~pIhiSNV~lvd~~~~k~t 80 (102) T 3ofq_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD 80 (102) T ss_dssp CCSCSSCCBCCCSSSSCSCCBCCCCCCSS-SCCCCSSSSCCCBCCCCCSSSCCCCCCBCCCCCCCSTTCCBBCSSSSSBC T ss_pred CCCCCCCEEEEEECCCCCCCEEEEEEECC-CEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCEEHHHEEEECCCCCCCE T ss_conf 86317999999479889974589999589-96999752758885078877589986899986783778888828789846 Q ss_pred EEEEEEECCEEEEEECCCCCEE Q ss_conf 8899999997999981568771 Q gi|254780250|r 79 RVGFSFVDGKKIRIAKRSGEPI 100 (102) Q Consensus 79 rv~~~~~dG~kvRv~kksg~~i 100 (102) |++|+++||+|+|||++||++| T Consensus 81 rv~~k~~dgkKvRv~kksg~~I 102 (102) T 3ofq_U 81 RVGFRFEDGKKVRFFKSNSETI 102 (102) T ss_dssp CCCCCCSSSCCCCCCTTSCCCC T ss_pred EEEEEEECCEEEEEEECCCCCC T ss_conf 8999998993999994479899 No 6 >1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Probab=99.90 E-value=2.3e-24 Score=151.45 Aligned_cols=72 Identities=25% Similarity=0.329 Sum_probs=66.3 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECCC-CCEEEE Q ss_conf 7226586999984378886469999974699899906059743205777656517999704686657889789-962288 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDKD-GKQVRV 80 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~~-~k~trv 80 (102) ++|++||+|+||+|+|+|++|+|++|+++.++|+|||+|+.++|.+ +.|+|||+|||||+||. ++++|+ T Consensus 41 ~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~rV~Vegvn~~k~~~k----------~~~~pIh~SNV~i~~~~~~~~~R~ 110 (120) T 1vq8_T 41 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE----------EVPRPLDTSNVRVTDLDLEDEKRE 110 (120) T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECSSSC----------EEECCBCGGGEEEEECCCCCHHHH T ss_pred CCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCEEEECCCC----------EEECCCCHHHEEEEECCCCCCHHH T ss_conf 3150799999956676997532999986799999948289955897----------786434648889984767870476 Q ss_pred EEE Q ss_conf 999 Q gi|254780250|r 81 GFS 83 (102) Q Consensus 81 ~~~ 83 (102) ++. T Consensus 111 ~~l 113 (120) T 1vq8_T 111 ARL 113 (120) T ss_dssp HHH T ss_pred HHH T ss_conf 676 No 7 >2wwb_L 60S ribosomal protein L26-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_L 2ww9_L 1s1i_U Probab=99.85 E-value=2.5e-22 Score=140.38 Aligned_cols=64 Identities=28% Similarity=0.317 Sum_probs=60.1 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECCCC Q ss_conf 72265869999843788864699999746998999060597432057776565179997046866578897899 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDKDG 75 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~~~ 75 (102) +.|++||+|+|++|+|+|++|+|++|++++++|+|||+|+.++|.+|. |+|||+|||+|+|+.. T Consensus 48 ~~IrkGD~V~Vi~G~~KGk~GkV~~V~~~~~kV~VEgvn~~K~~~k~~----------~~pIh~SNV~i~~~~~ 111 (127) T 2wwb_L 48 LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASV----------PINLHPSKLVITKLHL 111 (127) T ss_dssp EECCTTSEEEECSSSSTTCEEEEEEEETTTTEEEESSCCCCBTTTBCC----------CCCBCGGGEEEEECCC T ss_pred CEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEECEEEEECCCCCE----------ECCCCCHHEEEEECCC T ss_conf 106079999997743489413699998779999991838996389824----------2777635679993678 No 8 >2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=99.27 E-value=1e-11 Score=82.78 Aligned_cols=63 Identities=29% Similarity=0.388 Sum_probs=53.7 Q ss_pred CCCCCCCEEEEEECCCCCCE-EEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECCC Q ss_conf 72265869999843788864-69999974699899906059743205777656517999704686657889789 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKA-GQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDKD 74 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~-G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~~ 74 (102) ..|++||+|+|+.|.++|++ |+|.+|++++.+|.|||+...+. .|. +...|||.|||++..-+ T Consensus 47 ~pVrkgD~V~V~RG~fkG~e~GKV~~V~~k~~~I~VEgvt~~K~--------dG~--~v~~pIhpSnv~ItkL~ 110 (145) T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKA--------NGT--TVHVGIHPSKVVITRLK 110 (145) T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEECS--------SCC--EEECCBCGGGEEECC-C T ss_pred EEECCCCEEEEEECCCCCCCCCEEEEEEECCCEEEECCEEEECC--------CCC--EEECCCCCCCEEEEEEC T ss_conf 20136999999727978876867999980751999756689826--------997--76135275106999862 No 9 >1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Probab=96.68 E-value=0.0019 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=31.5 Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE Q ss_conf 2658699998437888646999997469989990 Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102) Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102) +..||.|.|++|...|-.|+|.++++.+.++.|. T Consensus 5 F~~Gd~V~V~~GpF~g~~g~V~~i~~~~~rv~Vl 38 (58) T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58) T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE T ss_pred CCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEE T ss_conf 0699999990368999899999991889999999 No 10 >2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Probab=96.28 E-value=0.0044 Score=35.87 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=30.3 Q ss_pred CCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE Q ss_conf 658699998437888646999997469989990 Q gi|254780250|r 5 RTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102) Q Consensus 5 kkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102) ++|+.|.|+.|+++|.+|++++++.++..+.|+ T Consensus 72 k~g~~V~Vv~G~~rG~~g~L~~id~~~~~~~v~ 104 (127) T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127) T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE T ss_pred CCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE T ss_conf 899979998467678589999993436889999 No 11 >2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Probab=95.99 E-value=0.0073 Score=34.67 Aligned_cols=35 Identities=26% Similarity=0.153 Sum_probs=31.4 Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE Q ss_conf 22658699998437888646999997469989990 Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102) Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102) .+..||.|.|++|..+|-.|.|.+++..++++.|. T Consensus 127 ~~~~Gd~V~I~~GPf~g~~g~v~~v~~~k~r~~V~ 161 (181) T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181) T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE T ss_pred CCCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEE T ss_conf 10079889991368999689999980778999999 No 12 >2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Probab=95.94 E-value=0.0071 Score=34.74 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=26.2 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEE Q ss_conf 7226586999984378886469999974699899 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAF 35 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~Vi 35 (102) ..++.||-|+||+|++.|.+|.|++|. .+.|+ T Consensus 16 K~F~~GDHVkVi~G~~~GetGlVV~v~--~~~v~ 47 (69) T 2do3_A 16 KYFKMGDHVKVIAGRFEGDTGLIVRVE--ENFVI 47 (69) T ss_dssp SSCCTTCEEEESSSTTTTCEEEEEEEC--SSCEE T ss_pred EECCCCCEEEEECCEECCCCEEEEEEE--CCEEE T ss_conf 513499838990656869757999996--99999 No 13 >2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A Probab=94.01 E-value=0.04 Score=30.68 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=33.7 Q ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEC Q ss_conf 97226586999984378886469999974699899906 Q gi|254780250|r 1 MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQG 38 (102) Q Consensus 1 M~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeG 38 (102) |.-+..|--|.+.+|.|+||...|+.++. .|+++|+| T Consensus 1 m~~VEvGRVv~i~~G~~~GKl~vIvdiiD-~~rvLVdG 37 (96) T 2joy_A 1 MPAIEVGRICVKVKGREAGSKCVIVDIID-DNFVLVTG 37 (96) T ss_dssp CCSSSTTEEEECSSSSTTCCEEEEEEECS-SSCEEEEC T ss_pred CCCEECCEEEEEEECCCCCCEEEEEEEEC-CCEEEEEC T ss_conf 99564578999940787897899999977-98699978 No 14 >1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Probab=93.94 E-value=0.0081 Score=34.43 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=30.5 Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE Q ss_conf 22658699998437888646999997469989990 Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102) Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102) .+..||.|.|++|..+|-.|.|.+++..++++.|. T Consensus 194 ~f~~Gd~V~I~~GPF~g~~G~V~eid~ek~rv~Vl 228 (248) T 1m1h_A 194 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248) T ss_dssp ----------------------------------- T ss_pred EECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEE T ss_conf 00179889994158999479999981888999999 No 15 >2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=88.09 E-value=0.19 Score=26.97 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.2 Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEE Q ss_conf 265869999843788864699999746998999 Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFV 36 (102) Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViV 36 (102) +..||.|.|+.|.-+|-+|+|.++... .|.+ T Consensus 8 F~~GD~VeV~~GEl~~l~G~V~~v~~d--~Vti 38 (59) T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDGN--KITI 38 (59) T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBTT--EEEE T ss_pred CCCCCEEEEECCEECCCEEEEEEECCC--EEEE T ss_conf 499998999226763779999997299--9999 No 16 >3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Probab=68.21 E-value=4.6 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=24.5 Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCC Q ss_conf 22658699998437888646999997469 Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKS 31 (102) Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~~V~~k~ 31 (102) ++..|..+.|+.|+..|..|+|..+-... T Consensus 138 ~fe~G~~~~vtgG~n~GrvG~I~~Ie~~~ 166 (213) T 3kbg_A 138 KMQPGNKAYITAGSHVNQTGTISKIEAKE 166 (213) T ss_dssp CCSTTCEEEECSSTTTTCEEEEEEECCCS T ss_pred ECCCCCEEEEECCCCCCEEEEEEEEEEEC T ss_conf 23699999995885264469999999725 No 17 >2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=66.80 E-value=5.5 Score=19.05 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.6 Q ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCEEEEEC Q ss_conf 586999984378886469999974699899906 Q gi|254780250|r 6 TGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQG 38 (102) Q Consensus 6 kGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeG 38 (102) .|-+|.|..|.+||-.|.|..+....-+|-..- T Consensus 20 iGktV~I~~GpyKG~~G~Vkd~t~~~~rVELhs 52 (71) T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATESTARVELHS 52 (71) T ss_dssp TTSEEEECSSTTTTCEEEEEEECSSCEEEEESS T ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEEEEC T ss_conf 588889966376886899996528879999815 No 18 >2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=63.16 E-value=2.9 Score=20.56 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=36.2 Q ss_pred CCCCCCCCEEEEEEC----------CCCCCEEEEEEEECCCCEEEE----------ECEEEEEEEECCCCCCCC Q ss_conf 972265869999843----------788864699999746998999----------060597432057776565 Q gi|254780250|r 1 MEKIRTGDRVLVLAG----------KDKGKAGQVMGVVRKSGRAFV----------QGVNIVKRHQRQTPNKEA 54 (102) Q Consensus 1 M~kikkGD~V~VisG----------kdKGk~G~V~~V~~k~~~ViV----------eGiN~~kkh~k~~~~~~g 54 (102) |..++.||.|-|..- .+-|++|+|..+....--|+| .-+|+.--|++++...+. T Consensus 31 l~~yk~GD~VdIk~d~svqKGMPhk~yhGkTG~V~~v~~~A~gV~Vnk~v~~r~~~Kri~vr~EHvr~Skcr~~ 104 (160) T 2zkr_q 31 MRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDS 104 (160) T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC----- T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCEECCCCEEEEEECCCEEEEEEEEEECCCEECCEEEEECEEECCCCCHHH T ss_conf 87515898899974585005897633435423588355814899999842673413068960547347644689 No 19 >2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A* Probab=52.10 E-value=12 Score=17.16 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=19.4 Q ss_pred CCCCCCEEEEEECC----------CCCCEEEEEEE Q ss_conf 22658699998437----------88864699999 Q gi|254780250|r 3 KIRTGDRVLVLAGK----------DKGKAGQVMGV 27 (102) Q Consensus 3 kikkGD~V~VisGk----------dKGk~G~V~~V 27 (102) +++.||.|.|..-. -+|++|+|.++ T Consensus 36 rF~vGD~Vrv~~~~p~gHtRlP~YvRGk~G~I~~~ 70 (126) T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRL 70 (126) T ss_dssp SSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEE T ss_pred CCCCCCEEEEECCCCCCCEECCHHHCCCEEEEEEE T ss_conf 34789999982489999404767778987899997 No 20 >3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} PDB: 3n99_A Probab=46.15 E-value=15 Score=16.63 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.5 Q ss_pred CCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE Q ss_conf 658699998437888646999997469989990 Q gi|254780250|r 5 RTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102) Q Consensus 5 kkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102) ..|.+..|+||.-||.+|.|.-=.---+.|+|. T Consensus 85 CiGN~A~V~SG~AkG~~G~VtGkHGg~ehvlV~ 117 (284) T 3dcl_A 85 CIGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284) T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEE T ss_pred ECCCEEEEEECCCCCCCCEEEECCCCEEEEEEE T ss_conf 328652897134579825696046875579997 No 21 >1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ... Probab=38.12 E-value=21 Score=15.92 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=22.9 Q ss_pred CCCCCCCCEEEEEEC----------CCCCCEEEEEEEECCCCEEEE Q ss_conf 972265869999843----------788864699999746998999 Q gi|254780250|r 1 MEKIRTGDRVLVLAG----------KDKGKAGQVMGVVRKSGRAFV 36 (102) Q Consensus 1 M~kikkGD~V~VisG----------kdKGk~G~V~~V~~k~~~ViV 36 (102) |..++.||.|-|..- .+-|++|+|...- ...++| T Consensus 31 l~~f~~GD~V~I~idpsv~kGMPh~~yhGkTG~V~~~~--g~a~~V 74 (96) T 1vq8_Q 31 VEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQ--GDAYKV 74 (96) T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEE--TTEEEE T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC--CEEEEE T ss_conf 51026998899973697113887521148735799436--739999 No 22 >1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B Probab=37.52 E-value=21 Score=15.87 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=19.6 Q ss_pred CCCCCCEEEEEECCC----------CCCEEEEEEEE Q ss_conf 226586999984378----------88646999997 Q gi|254780250|r 3 KIRTGDRVLVLAGKD----------KGKAGQVMGVV 28 (102) Q Consensus 3 kikkGD~V~VisGkd----------KGk~G~V~~V~ 28 (102) +++.||.|.|..-.- +|++|+|..+. T Consensus 138 ~F~vGd~Vrv~~~~~~gHtR~P~Y~rg~~G~I~~~~ 173 (226) T 1ugp_B 138 KFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226) T ss_dssp SCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE T ss_pred CCCCCCEEEECCCCCCCCEECCHHHCCCEEEEEEEE T ss_conf 478999899787899882017366678756999985 No 23 >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} Probab=34.88 E-value=23 Score=15.63 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=28.5 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEC Q ss_conf 7226586999984378886469999974699899906 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQG 38 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeG 38 (102) +|++.||.+.|.-|...--.++|.++.++.-.+.+.. T Consensus 31 LRl~~Gd~i~v~dg~G~~~~~~I~~i~k~~~~~~i~~ 67 (257) T 3kw2_A 31 LRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCG 67 (257) T ss_dssp SCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEE T ss_pred CCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEC T ss_conf 7689999899997979889999999038759998620 No 24 >3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_B 1v29_B Probab=34.55 E-value=24 Score=15.60 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=30.9 Q ss_pred CCCCCCEEEEEECC----------CCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEE Q ss_conf 22658699998437----------8886469999974699899906059743205777656517999704686657889 Q gi|254780250|r 3 KIRTGDRVLVLAGK----------DKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLI 71 (102) Q Consensus 3 kikkGD~V~VisGk----------dKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lv 71 (102) +++.||.|.|..-. =+|++|+|..+. | -|+-|..+.-|. -|.|-|+..|.+- T Consensus 141 ~F~vGd~Vrv~~~~~~gHtR~P~Y~rg~~G~i~~~~---------g-----~~~~Pd~~a~~~---~~~p~~lY~V~F~ 202 (229) T 3hht_B 141 RFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY---------G-----AHVFPDDAAHRK---GENPQYLYRVRFE 202 (229) T ss_dssp SCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE---------E-----EECCHHHHTTTS---CCCCEEEEEEEEE T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHCCCEEEEEEEE---------C-----CCCCCCCCCCCC---CCCCEEEEEEEEC T ss_conf 567898778842789985006577678746999883---------6-----878962124688---9887046998871 No 25 >3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q Probab=29.76 E-value=8.4 Score=18.06 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=26.6 Q ss_pred CCCCCCCCEEEEEEC----------CCCCCEEEEEEEECCCCEEEEE Q ss_conf 972265869999843----------7888646999997469989990 Q gi|254780250|r 1 MEKIRTGDRVLVLAG----------KDKGKAGQVMGVVRKSGRAFVQ 37 (102) Q Consensus 1 M~kikkGD~V~VisG----------kdKGk~G~V~~V~~k~~~ViVe 37 (102) |..++.||.|-|.-- .+-|++|+|..+-+...-++|. T Consensus 30 l~~yk~GD~VdIkidpsvqKGMPhk~yhGkTG~V~~v~~ravgviVn 76 (116) T 3jyw_Q 30 LKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIIN 76 (116) T ss_dssp TCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEE T ss_pred HHHCCCCCEEEEEECCCEECCCCCCEECCCCEEEEEECCCEEEEEEE T ss_conf 74336998899974587657997644547654288477967999999 No 26 >1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_B Probab=26.86 E-value=28 Score=15.24 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=9.4 Q ss_pred EEEEEECCCCCCEEEEEEEECCCC Q ss_conf 999984378886469999974699 Q gi|254780250|r 9 RVLVLAGKDKGKAGQVMGVVRKSG 32 (102) Q Consensus 9 ~V~VisGkdKGk~G~V~~V~~k~~ 32 (102) .|.|--=.+.--.|++..++..-| T Consensus 14 ~VtVELKnG~~~~G~L~~vD~~MN 37 (119) T 1b34_A 14 TVTIELKNGTQVHGTITGVDVSMN 37 (119) T ss_dssp EEEEEETTCCEEEEEEEEECTTCC T ss_pred EEEEEECCCCEEEEEEEEECCCEE T ss_conf 699998899699999999859886 No 27 >2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii OT3} SCOP: b.40.12.1 Probab=24.78 E-value=36 Score=14.64 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.8 Q ss_pred CCCEEEEEEEECCCCEEEEECEEE Q ss_conf 886469999974699899906059 Q gi|254780250|r 18 KGKAGQVMGVVRKSGRAFVQGVNI 41 (102) Q Consensus 18 KGk~G~V~~V~~k~~~ViVeGiN~ 41 (102) .|++|.++..+....+|.++|-.- T Consensus 17 IG~~g~v~~~~~~~G~V~v~Ge~W 40 (80) T 2exd_A 17 KGKVGKVVKIAEDHYLVEVEGDKW 40 (80) T ss_dssp TTCEEEEEECCTTCEEEEETTEEE T ss_pred CCCEEEEEEECCCCEEEEECCEEE T ss_conf 299999979679999999999899 No 28 >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Probab=20.97 E-value=43 Score=14.21 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=26.8 Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEE Q ss_conf 72265869999843788864699999746998999 Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFV 36 (102) Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViV 36 (102) +|++.||.|.|.-|...--.++|.++.++.-.+.+ T Consensus 34 LRlk~Gd~I~v~dg~G~~~~a~I~~~~k~~~~~~i 68 (257) T 1vhy_A 34 LRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEI 68 (257) T ss_dssp SCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEE T ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEE T ss_conf 83899999999979899999999986686376310 No 29 >3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B Probab=20.34 E-value=44 Score=14.13 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=15.7 Q ss_pred CCCCCCEEEEEECC----------CCCCEEEEE Q ss_conf 22658699998437----------888646999 Q gi|254780250|r 3 KIRTGDRVLVLAGK----------DKGKAGQVM 25 (102) Q Consensus 3 kikkGD~V~VisGk----------dKGk~G~V~ 25 (102) +++.||.|.|..-. =+||+|+|. T Consensus 122 ~F~vGd~Vrv~~~~~~gHtRlP~Y~rgk~G~I~ 154 (212) T 3a8g_B 122 TFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTIS 154 (212) T ss_dssp CCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEE T ss_pred CCCCCCEEEECCCCCCCCEECCHHHCCCEEEEE T ss_conf 679999899754899983016166668747998 Done!