Query gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 112 out of 994
Neff 5.2
Searched_HMMs 23785
Date Tue May 24 06:21:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780251.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whi_A Ribosomal protein L14; 100.0 0 0 321.2 11.6 122 1-122 1-122 (122)
2 2j01_O 50S ribosomal protein L 100.0 0 0 319.3 11.0 122 1-122 1-122 (122)
3 3bbo_M Ribosomal protein L14; 100.0 0 0 316.3 10.8 121 1-122 1-121 (121)
4 3ofq_K 50S ribosomal protein L 100.0 0 0 308.0 6.0 121 1-121 1-122 (122)
5 1vq8_K 50S ribosomal protein L 100.0 0 0 294.0 10.5 118 1-122 11-132 (132)
6 2zkr_k 60S ribosomal protein L 100.0 0 0 290.4 9.6 117 1-121 19-139 (140)
7 2bm3_A Type 2 cohesin, scaffol 21.4 41 0.0017 14.1 2.4 16 30-45 15-30 (166)
8 1n9l_A PHOT-LOV1, putative blu 19.6 45 0.0019 13.9 3.4 31 67-97 71-101 (109)
9 1tyj_A Cellulosomal scaffoldin 19.4 45 0.0019 13.9 2.2 16 30-45 9-24 (170)
10 2v0u_A NPH1-1, LOV2; kinase, t 19.2 45 0.0019 13.9 3.5 28 70-97 83-110 (146)
No 1
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=0 Score=321.17 Aligned_cols=122 Identities=56% Similarity=0.849 Sum_probs=120.6
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++++++++++|.+||+|++|||+++|+++++||++++|+|||||++++|+||++++||
T Consensus 1 MIq~~T~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEECCCEEEEEEEEEECCEECCCCCEEECC
T ss_conf 97656679986789997899999968888333546989999996046798136463500899975021085999989828
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
||||||+|++++|+||||+||+|+|||+++|+||+||||+||
T Consensus 81 ~Na~VLi~~~~~p~GtrI~Gpv~~elr~~~~~Ki~slA~~ii 122 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CCEEEEECCCCCEEEEEEECCCCHHHHHCCCCHHEECCCHHC
T ss_conf 987999979999905279615229886468942203541019
No 2
>2j01_O 50S ribosomal protein L14; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.39.1.1 PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 3fin_O ...
Probab=100.00 E-value=0 Score=319.28 Aligned_cols=122 Identities=57% Similarity=0.881 Sum_probs=120.6
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++|+++++++|++||+|++|||+++|+++++||++++|+||||||+++|.||++++||
T Consensus 1 MIq~~T~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~i~vsVk~~~~~~~vkkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
T 2j01_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CCCTTCEEEECSSSSCCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECCEEEEEEEEEECCEECCCCCEEEEC
T ss_conf 97666679984689987899999977788526767858999998326688435020504889986042084999999808
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
||||||+|++++|+||||+||+|+|||+++|+||+|||++||
T Consensus 81 ~Na~VLi~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~ii 122 (122)
T 2j01_O 81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp SCEEEEECTTSCCSSSCCCSCCCTHHHHHCCHHHHHHCSCCC
T ss_pred CCEEEEECCCCCEEEEEEECCCCHHHHHCCCCHHEECCCCCC
T ss_conf 987999989999903479435009986468833203541009
No 3
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=316.26 Aligned_cols=121 Identities=45% Similarity=0.797 Sum_probs=119.1
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++|+++++++|.+||+|++|||++.|+++++||++++|+|||||++++|+||++++||
T Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~i~vsVkk~~~~~~vkkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEECCCEEEEEEEEECCCEECCCCCEEEEC
T ss_conf 96666679884689998899999848888646778999999999351598435121513778741252273899988838
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
||||||+|++++|+||||+||+|+|||++ |+||+||||+||
T Consensus 81 ~Na~VLi~~~~~P~GtrI~Gpv~~elr~k-~~Ki~slA~~ii 121 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIFGAIARELRQK-FAKIVSLAPEVL 121 (121)
T ss_dssp SCEEEECCTTSSCSSSCCCSCCCGGGTTT-CHHHHHHSSCCC
T ss_pred CCEEEEECCCCCEEEEEEECCCCHHHHHH-CCHHHHCCCCCC
T ss_conf 96799997999990617963548999865-208863242009
No 4
>3ofq_K 50S ribosomal protein L14; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3ofr_K* 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* 2qba_K* 2qbc_K* 2qbe_K 2qbg_K 2qbi_K* 2qbk_K* 2qov_K 2qox_K ...
Probab=100.00 E-value=0 Score=308.04 Aligned_cols=121 Identities=59% Similarity=0.941 Sum_probs=118.5
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++|++++++++.+||+|+++|+++.|+++++||++++|+|||||++++|+||++++||
T Consensus 1 MIq~~T~l~v~DNSGak~v~cI~v~~~~~~~~~~vgd~i~v~Vk~~~~~~k~~kg~v~~AvIVrtkk~~~R~dG~~i~F~ 80 (122)
T 3ofq_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (122)
T ss_dssp CCCSEEEEEECSSSSCSCEEEEEECSSTTCCCCCTTCEEEEEECCCCSSSSSCTTCCCCEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECEEEEEEEEEEECCEECCCCCEEECC
T ss_conf 96666679986589875799999978878766766869999999716588356021778999986030285999989818
Q ss_pred CEEEEEECCCC-CEECCEEECCHHHHHHCCCCEEEEEECCCC
Q ss_conf 80599998999-760226633100666417980887524312
Q gi|254780251|r 81 KNAAVLIDNKK-DLLASRVFGPVPRELRIKGHLKILSLAAEV 121 (122)
Q Consensus 81 ~Na~VLin~~~-~p~GtRI~Gpv~~elr~~~~~Ki~slA~~v 121 (122)
|||+||+|+++ +|+||||+||||+|||.++|+||+||||+|
T Consensus 81 ~Na~VLin~~~~~P~GTrI~Gpv~~elr~~~~~Ki~slA~~i 122 (122)
T 3ofq_K 81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp SCEEEEBCGGGCSBSSSCCCSCCCTTSCSGGGHHHHHSSSCC
T ss_pred CCEEEEEECCCCCCCCCEEEEEEHHHHHHCCCCHHHCCCCCC
T ss_conf 986999808999835687973163997675883223215669
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=0 Score=294.02 Aligned_cols=118 Identities=34% Similarity=0.519 Sum_probs=111.0
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCE
Q ss_conf 967786899996789429999997268876----4257388899999820578721477378999997113517689888
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKR----KCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSV 76 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~----~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~ 76 (122)
|||.+|+|+|+|||||++++||++++++.+ ++|.+||+|++|||++.|+ +||++++|+|||||++++|+||++
T Consensus 11 ~iq~~s~l~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~p~---~k~~v~~AVIVrtkk~~~R~dG~~ 87 (132)
T 1vq8_K 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQVLEAVVVRQRKPIRRPDGTR 87 (132)
T ss_dssp CEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTT---TTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCC---CCCCEEEEEEEEECCCEECCCCCE
T ss_conf 34516789984288875799999965667433366686162999999746765---467522577888746328499998
Q ss_pred EEECCEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8618805999989997602266331006664179808875243129
Q gi|254780251|r 77 VRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 77 i~F~~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
++||||||||+|++++|+||||||||++|||++ |+||+|||++||
T Consensus 88 i~FddNa~VLi~~~~~p~GTrI~GpV~~Elr~k-~~ki~slA~~iv 132 (132)
T 1vq8_K 88 VKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-FGSVASAATMIV 132 (132)
T ss_dssp EEESSCEEEEECTTSCBSSSCBCSEECHHHHHH-SHHHHTTCSEEC
T ss_pred EECCCCEEEEECCCCCEEEEEEECCHHHHHHHH-HHHHHHCCCCCC
T ss_conf 984897899998999982607816177999876-158885231109
No 6
>2zkr_k 60S ribosomal protein L23; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_R 2x7n_C 3jyw_R
Probab=100.00 E-value=0 Score=290.39 Aligned_cols=117 Identities=31% Similarity=0.470 Sum_probs=110.9
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCE
Q ss_conf 967786899996789429999997268876----4257388899999820578721477378999997113517689888
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKR----KCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSV 76 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~----~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~ 76 (122)
|||.+|+|+|+|||||++++||++++++++ ++|.+||+|++|||++.|. +||++++|+|||||++++|+||++
T Consensus 19 ~iq~~T~l~V~DNSGak~v~cI~v~~~~~~~~~~~~a~iGD~I~vsVk~~~~~---~k~~v~~avIVrtkk~~~R~dG~~ 95 (140)
T 2zkr_k 19 GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE---LRKKVHPAVVIRQRKSYRRKDGVF 95 (140)
T ss_dssp CEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTT---TTTCEEEEEEEECSSCEECTTSCE
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCC---CCCCEEEEEEEEECCCEECCCCCE
T ss_conf 54537889986388874899999977678432356674507999999347885---543417988888714058699988
Q ss_pred EEECCEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCC
Q ss_conf 861880599998999760226633100666417980887524312
Q gi|254780251|r 77 VRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEV 121 (122)
Q Consensus 77 i~F~~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~v 121 (122)
++||||||||||++++|+||||||||++|||++ |+||+|||++|
T Consensus 96 i~FddNavVLl~~~~~P~GTRI~GPV~~Elr~k-~~kI~slA~~i 139 (140)
T 2zkr_k 96 LYFEDNAGVIVNNKGEMKGSAITGPVAKECADL-WPRIASNAGSI 139 (140)
T ss_dssp ECCSSCEEEEBCTTSCBSSSCBCSCCCHHHHHH-CHHHHTTCSCC
T ss_pred EEECCCEEEEECCCCCEEEEEEECCHHHHHHHH-HHHHHHCCCCC
T ss_conf 980897699998999880416806353999876-13876435323
No 7
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=21.37 E-value=41 Score=14.12 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.3
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 15 Kt~a~VGdiItATi~v 30 (166)
T 2bm3_A 15 RNKGEVGDILIGTVRI 30 (166)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEE
T ss_conf 5520113289999997
No 8
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=19.58 E-value=45 Score=13.90 Aligned_cols=31 Identities=10% Similarity=-0.116 Sum_probs=25.4
Q ss_pred CCEECCCCCEEEECCEEEEEECCCCCEECCE
Q ss_conf 3517689888861880599998999760226
Q gi|254780251|r 67 YGIRRSDGSVVRFDKNAAVLIDNKKDLLASR 97 (122)
Q Consensus 67 k~~~R~dG~~i~F~~Na~VLin~~~~p~GtR 97 (122)
...+|+||..+-.+-+...+.|++|++.+--
T Consensus 71 ~~~~~kdG~~~~~~~~~~pv~d~~G~~~~~i 101 (109)
T 1n9l_A 71 LLNYRKDGTPFWNLLTVTPIKTPDGRVSKFV 101 (109)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf 9988799989999999999999998999999
No 9
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2
Probab=19.44 E-value=45 Score=13.88 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.2
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 9 Kt~a~VGdIItAtIkv 24 (170)
T 1tyj_A 9 NDKVAVGDKVTLTINV 24 (170)
T ss_dssp CSEECTTCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEE
T ss_conf 6641113289999996
No 10
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal transduction, phototropin1; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=19.24 E-value=45 Score=13.85 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=23.9
Q ss_pred ECCCCCEEEECCEEEEEECCCCCEECCE
Q ss_conf 7689888861880599998999760226
Q gi|254780251|r 70 RRSDGSVVRFDKNAAVLIDNKKDLLASR 97 (122)
Q Consensus 70 ~R~dG~~i~F~~Na~VLin~~~~p~GtR 97 (122)
+++||+.+-++-++.-+.|++|++.|.-
T Consensus 83 ~~kdG~~~w~~~~~~pi~d~~g~~~~~i 110 (146)
T 2v0u_A 83 YTKSGKKFWNLFHLQPMRDQKGDVQYFI 110 (146)
T ss_dssp ECTTCCEEEEEEEEEEEECTTSCEEEEE
T ss_pred EECCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf 8518978999999999997998999999
Done!