RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14
[Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus
stearothermophilus} (A:)
Length = 122
Score = 141 bits (357), Expect = 3e-35
Identities = 68/122 (55%), Positives = 87/122 (71%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
MIQ ++ L ++DNSGAR V IKVLGGS R+ A+IGD VV VK+ P VKKG V KA
Sbjct: 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60
Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
++VR G+RR DGS +RFD+NA V+I + K +R+FGPV RELR K +KI+SLA E
Sbjct: 61 VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120
Query: 121 VV 122
V+
Sbjct: 121 VI 122
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} (M:)
Length = 121
Score = 136 bits (344), Expect = 9e-34
Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
MIQ QT L+++DNSGAR + CI+++G S R+ A IGD +V +KE IP + +++ V +A
Sbjct: 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
++VR ++R +G ++R+D NAAV+ID + + +R+FG + RELR K KI+SLA E
Sbjct: 61 VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-FAKIVSLAPE 119
Query: 121 VV 122
V+
Sbjct: 120 VL 121
>2j01_O 50S ribosomal protein L14; ribosome, tRNA, paromomycin,
mRNA, translation; 2.8A {Thermus thermophilus} (O:1-99)
Length = 99
Score = 120 bits (304), Expect = 4e-29
Identities = 53/99 (53%), Positives = 72/99 (72%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
MIQ QT L ++DN+GAR + CI+VL GS K A++GD +V +VKE IPR VK+G V KA
Sbjct: 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVF 99
++VR I+R DGS +RFD NAAV+I+N+ + +RVF
Sbjct: 61 VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVF 99
>3i1n_K 50S ribosomal protein L14; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1p85_I 1p86_I 1vs8_K
2aw4_K 2awb_K 1vs6_K 2i2v_K 2i2t_K* 2qao_K* 2qba_K*
2qbc_K* 2qbe_K 2qbg_K 2qbi_K* 2qbk_K* 2qov_K 2qox_K
2qoz_K* 2qp1_K* 2rdo_K ... (K:1-99)
Length = 99
Score = 115 bits (290), Expect = 2e-27
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
MIQ QT L+++DNSGAR V CIKVLGGS R+ A +GD + + +KE IPR KVKKG V KA
Sbjct: 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNK-KDLLASRV 98
++VR G+RR DGSV+RFD NA VL++N + + +R+
Sbjct: 61 VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRI 99
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein
complex, RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} (K:1-106)
Length = 106
Score = 93.8 bits (233), Expect = 7e-21
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56
++ + ++ +DN+GAR +K I V G S K A +GD + V+V + P +
Sbjct: 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQ 67
Query: 57 VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94
V +A++VR IRR DG+ V+F+ NAAV++D +D
Sbjct: 68 VLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPR 105
>2zkr_k 60S ribosomal protein L23; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} PDB: 1s1i_R (k:1-114)
Length = 114
Score = 91.4 bits (227), Expect = 4e-20
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56
+ + ++ +DN+GA+ + I V G R A +GD V+ VK+ P +
Sbjct: 19 GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP---ELRKK 75
Query: 57 VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94
V A+++R RR DG + F+ NA V+++NK ++
Sbjct: 76 VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMK 113
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8
barrel, riken structural genomics/proteomics initiative,
RSGI; 2.20A {Pyrococcus horikoshii} (A:359-429)
Length = 71
Score = 29.7 bits (67), Expect = 0.15
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 76 VVRFDKNAAVLIDNKKDLLASRVFGPVPREL 106
V R + A + + +L+ +FG V R L
Sbjct: 23 VRRAKERAKSINERFGELVEHPIFGRVSRYL 53
>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form,
hydrolase; 1.49A {Homo sapiens} (A:1-79,A:271-382)
Length = 191
Score = 28.0 bits (62), Expect = 0.42
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 74 GSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKI 114
GSV+ F + + LL + P R +
Sbjct: 85 GSVISFPSPRSGPGSPAQWLLYT---HPTHSWQRADLGAYL 122
>1b12_A Signal peptidase I; serine proteinase, serine-dependant
hydrolase, signal peptide processing, protein
translocation, membrane bound proteinase; HET: 1PN;
1.95A {Escherichia coli} (A:72-99,A:175-215)
Length = 69
Score = 25.6 bits (56), Expect = 2.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 85 VLIDNKKDLLASRVFGPVPR 104
++ DN+ + SR +G VP
Sbjct: 49 MMGDNRDNSADSRYWGFVPE 68
>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2;
structural genomics, protein structure initiative; 1.80A
{Archaeoglobus fulgidus} (A:)
Length = 174
Score = 24.6 bits (53), Expect = 4.7
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 84 AVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122
A ++ D+ + K ++ A +
Sbjct: 1 AKALEQPFDVANIPGPKMATLLEKGKPVANMIKKAKRPL 39
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A (A:151-239,A:464-723)
Length = 349
Score = 23.6 bits (50), Expect = 9.0
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 4 MQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVK 53
+ + IS + R+ K L +G V V V EV + +++
Sbjct: 277 KEGLVHISQIADKRVEKVTDYL--------QMGQEVPVKVLEVDRQGRIR 318
>2k0m_A Uncharacterized protein; structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Rhodospirillum rubrum atcc 11170} (A:)
Length = 104
Score = 23.5 bits (51), Expect = 9.7
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 38 TVVVAVKEVIPRSKVKKGSVQKAIIVRVSYG------IRRSDGSVVRF 79
+V + P + K G + VR + I R+DGS RF
Sbjct: 43 AFLVEALKRHPDATSKIGPGVRNFEVRSADYGTQCFWILRTDGSEERF 90
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.135 0.363
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 829,705
Number of extensions: 33661
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 19
Length of query: 122
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 49
Effective length of database: 2,488,284
Effective search space: 121925916
Effective search space used: 121925916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)