RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str. psy62] (122 letters) >d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122 Score = 152 bits (386), Expect = 7e-39 Identities = 69/122 (56%), Positives = 91/122 (74%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60 MIQ QT L ++DN+GAR + CI+VL GS K A++GD +V +VKE IPR VK+G V KA Sbjct: 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60 Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120 ++VR I+R DGS +RFD NAAV+I+N+ + +RVFGPV RELR KG +KI+SLA E Sbjct: 61 VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPE 120 Query: 121 VV 122 V+ Sbjct: 121 VL 122 >d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122 Score = 144 bits (365), Expect = 2e-36 Identities = 68/122 (55%), Positives = 87/122 (71%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60 MIQ ++ L ++DNSGAR V IKVLGGS R+ A+IGD VV VK+ P VKKG V KA Sbjct: 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60 Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120 ++VR G+RR DGS +RFD+NA V+I + K +R+FGPV RELR K +KI+SLA E Sbjct: 61 VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120 Query: 121 VV 122 V+ Sbjct: 121 VI 122 >d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121 Score = 134 bits (338), Expect = 2e-33 Identities = 70/121 (57%), Positives = 91/121 (75%), Gaps = 1/121 (0%) Query: 2 IQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAI 61 IQ QT L+++DNSGAR V CIKVLGGS R+ A +GD + + +KE IPR KVKKG V KA+ Sbjct: 1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60 Query: 62 IVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDL-LASRVFGPVPRELRIKGHLKILSLAAE 120 +VR G+RR DGSV+RFD NA VL++N + + +R+FGPV RELR + +KI+SLA E Sbjct: 61 VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 120 Query: 121 V 121 V Sbjct: 121 V 121 >d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132 Score = 127 bits (320), Expect = 3e-31 Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56 ++ + ++ +DN+GAR +K I V G S K A +GD + V+V + P + Sbjct: 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQ 67 Query: 57 VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILS 116 V +A++VR IRR DG+ V+F+ NAAV++D +D + + GP+ RE+ + + S Sbjct: 68 VLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA-QRFGSVAS 126 Query: 117 LAAEVV 122 A +V Sbjct: 127 AATMIV 132 >d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247 Score = 28.8 bits (63), Expect = 0.15 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Query: 84 AVLIDNKKDLLASRVFGPVPRELRIKG 110 ++ DN+ + SR +G VP + G Sbjct: 193 FMMGDNRDNSADSRYWGFVPEA-NLVG 218 >d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 473 Score = 24.6 bits (53), Expect = 2.4 Identities = 5/38 (13%), Positives = 16/38 (42%) Query: 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLA 118 N A ++ + +++ R F P + + + + + Sbjct: 303 NNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWS 340 >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 Score = 23.5 bits (50), Expect = 4.7 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 4/62 (6%) Query: 22 IKVLG----GSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVV 77 K+LG G A+K + + V+ ++ + + + Sbjct: 7 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLT 66 Query: 78 RF 79 Sbjct: 67 HM 68 >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 Score = 23.4 bits (50), Expect = 6.4 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 22 IKVLG----GSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAI 61 ++ +G G+ + ++ VVA+K++ K Q I Sbjct: 20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDII 63 >d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]} Length = 174 Score = 23.0 bits (49), Expect = 8.3 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%) Query: 18 LVKCIKVLGGSKRKCASIGDTVVV-------AVKEVIPRSKVKKGSVQKAIIVRVSY-GI 69 L K I +G +R+ + D ++ +K V+P ++K S + Sbjct: 30 LSKNIVAVGSLRREEKMLNDVDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLF 89 Query: 70 RRSDGSVVRFD 80 + + D Sbjct: 90 IEWEKKTYQLD 100 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.135 0.363 Gapped Lambda K H 0.267 0.0711 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 413,759 Number of extensions: 17839 Number of successful extensions: 38 Number of sequences better than 10.0: 1 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 16 Length of query: 122 Length of database: 2,407,596 Length adjustment: 75 Effective length of query: 47 Effective length of database: 1,377,846 Effective search space: 64758762 Effective search space used: 64758762 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (21.9 bits)