RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14
[Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
thermophilus [TaxId: 274]}
Length = 122
Score = 152 bits (386), Expect = 7e-39
Identities = 69/122 (56%), Positives = 91/122 (74%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
MIQ QT L ++DN+GAR + CI+VL GS K A++GD +V +VKE IPR VK+G V KA
Sbjct: 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
++VR I+R DGS +RFD NAAV+I+N+ + +RVFGPV RELR KG +KI+SLA E
Sbjct: 61 VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPE 120
Query: 121 VV 122
V+
Sbjct: 121 VL 122
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 144 bits (365), Expect = 2e-36
Identities = 68/122 (55%), Positives = 87/122 (71%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
MIQ ++ L ++DNSGAR V IKVLGGS R+ A+IGD VV VK+ P VKKG V KA
Sbjct: 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60
Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
++VR G+RR DGS +RFD+NA V+I + K +R+FGPV RELR K +KI+SLA E
Sbjct: 61 VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120
Query: 121 VV 122
V+
Sbjct: 121 VI 122
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 134 bits (338), Expect = 2e-33
Identities = 70/121 (57%), Positives = 91/121 (75%), Gaps = 1/121 (0%)
Query: 2 IQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAI 61
IQ QT L+++DNSGAR V CIKVLGGS R+ A +GD + + +KE IPR KVKKG V KA+
Sbjct: 1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 62 IVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDL-LASRVFGPVPRELRIKGHLKILSLAAE 120
+VR G+RR DGSV+RFD NA VL++N + + +R+FGPV RELR + +KI+SLA E
Sbjct: 61 VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 120
Query: 121 V 121
V
Sbjct: 121 V 121
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 127 bits (320), Expect = 3e-31
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56
++ + ++ +DN+GAR +K I V G S K A +GD + V+V + P +
Sbjct: 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQ 67
Query: 57 VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILS 116
V +A++VR IRR DG+ V+F+ NAAV++D +D + + GP+ RE+ + + S
Sbjct: 68 VLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA-QRFGSVAS 126
Query: 117 LAAEVV 122
A +V
Sbjct: 127 AATMIV 132
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.8 bits (63), Expect = 0.15
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 84 AVLIDNKKDLLASRVFGPVPRELRIKG 110
++ DN+ + SR +G VP + G
Sbjct: 193 FMMGDNRDNSADSRYWGFVPEA-NLVG 218
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 24.6 bits (53), Expect = 2.4
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLA 118
N A ++ + +++ R F P + + + + +
Sbjct: 303 NNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWS 340
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 23.5 bits (50), Expect = 4.7
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 22 IKVLG----GSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVV 77
K+LG G A+K + + V+ ++ + + +
Sbjct: 7 HKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLT 66
Query: 78 RF 79
Sbjct: 67 HM 68
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 23.4 bits (50), Expect = 6.4
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 22 IKVLG----GSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAI 61
++ +G G+ + ++ VVA+K++ K Q I
Sbjct: 20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDII 63
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus
[TaxId: 10497]}
Length = 174
Score = 23.0 bits (49), Expect = 8.3
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 18 LVKCIKVLGGSKRKCASIGDTVVV-------AVKEVIPRSKVKKGSVQKAIIVRVSY-GI 69
L K I +G +R+ + D ++ +K V+P ++K S +
Sbjct: 30 LSKNIVAVGSLRREEKMLNDVDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLF 89
Query: 70 RRSDGSVVRFD 80
+ + D
Sbjct: 90 IEWEKKTYQLD 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.363
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,759
Number of extensions: 17839
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 16
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)