BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14
[Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 122

 Score =  236 bits (603), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
           MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA
Sbjct: 1   MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60

Query: 61  IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
           IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE
Sbjct: 61  IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120

Query: 121 VV 122
           VV
Sbjct: 121 VV 122


>gi|254780780|ref|YP_003065193.1| histidine triad (HIT) protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 155

 Score = 23.1 bits (48), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 22 IKVLGGSKRKCASIGDTVVVAVKEVIPRS 50
          IK++      C    D +++A+ +++PR+
Sbjct: 16 IKIIRNETNACRVYEDDILLAIMDIMPRN 44


>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 21.9 bits (45), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 59  KAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKK 91
           + ++ R+ Y +RR  G     +   A+L+ NK+
Sbjct: 251 QQLLNRLRYSLRRGTGYFGVMNYRGAMLLSNKE 283


>gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 244

 Score = 21.9 bits (45), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 90  KKDLLASRVFGPVPRELRIKGHL 112
           +KD L S++F  + RE+ +   L
Sbjct: 16  RKDALKSKIFSKLSREITVSAKL 38


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 21.6 bits (44), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 76   VVRFDKNAAVLIDNKKDLLASR 97
            V +FDKN+ +LI +   L+ ++
Sbjct: 1402 VSKFDKNSQILIKSHDSLMKAQ 1423


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 21.2 bits (43), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 61  IIVRVSYGIRRSDGSVVRFDKNAAV 85
             + V   IR +DG++   D NA V
Sbjct: 93  FTMEVERSIRVTDGAIALLDSNAGV 117


>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 503

 Score = 20.4 bits (41), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 65  VSYGIRRSDGSVVRF 79
           VSY I +S GS+  F
Sbjct: 231 VSYSIGKSKGSITHF 245


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,937
Number of Sequences: 1233
Number of extensions: 2299
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 122
length of database: 328,796
effective HSP length: 64
effective length of query: 58
effective length of database: 249,884
effective search space: 14493272
effective search space used: 14493272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)