Query gi|254780252|ref|YP_003064665.1| 30S ribosomal protein S17 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 79
No_of_seqs 106 out of 1566
Neff 5.4
Searched_HMMs 33803
Date Tue May 24 07:52:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780252.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2vqe_Q 30S ribosomal protein 100.0 9.7E-32 2.9E-36 194.6 9.6 78 1-78 1-78 (105)
2 >1qd7_I S17 ribosomal protein; 100.0 1.9E-30 5.5E-35 187.6 10.8 77 2-78 1-77 (89)
3 >2zkq_q 40S ribosomal protein 100.0 1.3E-30 3.8E-35 188.5 8.5 78 1-78 68-147 (158)
4 >3bbn_Q Ribosomal protein S17; 100.0 3E-30 8.7E-35 186.5 9.2 76 2-77 59-134 (142)
5 >3i1m_Q 30S ribosomal protein 100.0 5.9E-30 1.8E-34 184.8 4.6 76 2-77 4-79 (84)
6 >1c05_A Ribosomal protein S4 d 38.1 14 0.0004 17.8 1.2 17 46-62 11-27 (83)
7 >2hj1_A Hypothetical protein; 24.9 51 0.0015 14.7 2.4 20 46-67 69-88 (97)
8 >2ot2_A Hydrogenase isoenzymes 23.2 36 0.0011 15.5 1.3 19 49-67 40-58 (75)
9 >2crv_A IF-2MT, translation in 22.9 56 0.0016 14.4 2.4 64 8-71 33-110 (120)
10 >1l1l_A Ribonucleoside triphos 22.1 33 0.00098 15.7 0.9 22 28-49 4-25 (116)
11 >1vio_A Ribosomal small subuni 21.0 33 0.00097 15.7 0.7 22 44-66 36-57 (57)
No 1
>>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (Q:)
Probab=99.97 E-value=9.7e-32 Score=194.64 Aligned_cols=78 Identities=56% Similarity=0.882 Sum_probs=76.4
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 973479999996089861999997188786413087351038986886604068789999637754320399997640
Q gi|254780252|r 1 MPKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSEG 78 (79)
Q Consensus 1 m~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~~ 78 (79)
||+|+|.|+|+|++|+||++|++++++|||+|+|+++++++|+||||+|+|++||+|+|.|||||||+|+|+|+++..
T Consensus 1 M~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~k~~~~~kky~aHD~~~~~~~GD~V~I~e~rPlSk~k~~~v~~i~~ 78 (105)
T 2vqe_Q 1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVE 78 (105)
T ss_dssp -CCCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
T ss_conf 996089999995679974899999999648767899860799999989889999999999877788917799999985
No 2
>>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} (I:)
Probab=99.97 E-value=1.9e-30 Score=187.58 Aligned_cols=77 Identities=44% Similarity=0.665 Sum_probs=74.4
Q ss_pred CCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 73479999996089861999997188786413087351038986886604068789999637754320399997640
Q gi|254780252|r 2 PKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSEG 78 (79)
Q Consensus 2 ~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~~ 78 (79)
.+|+|.|+|+|++|+||++|+++|++|||+|+|+++++++|+||||+|+|++||+|.|+|||||||+|+|+|+|+..
T Consensus 1 ~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~k~~~r~kky~aHD~~~~~~~GD~V~I~e~rPlSK~k~~~v~~Ii~ 77 (89)
T 1qd7_I 1 QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVE 77 (89)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEH
T ss_conf 98589999994179974999999999757557899970799999999989999899999877789968699999984
No 3
>>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_Q (q:)
Probab=99.97 E-value=1.3e-30 Score=188.47 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=74.5
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCC--CCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 973479999996089861999997188786413087351038986886--604068789999637754320399997640
Q gi|254780252|r 1 MPKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDEN--NKYKVGDFVSIEESAPISKKKSWLVIDSEG 78 (79)
Q Consensus 1 m~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~--~~~~~GD~V~i~e~rPiSK~K~~~vve~~~ 78 (79)
|++|+|.|+|+|++|+|||+|+++|++|||+|+||++++++|+||||. |+|++||+|+|+|||||||+|+|+|+++..
T Consensus 68 irgril~G~VvS~KM~KTvvV~v~~~~~~~kY~K~~kr~kky~aHd~~~~n~~kvGD~V~I~EcRPlSKtkrf~V~~Ii~ 147 (158)
T 2zkq_q 68 IRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTK 147 (158)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEE
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
T ss_conf 61489999999633888779999999962643229885066899883220768899999998755688848799999987
No 4
>>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (Q:)
Probab=99.96 E-value=3e-30 Score=186.47 Aligned_cols=76 Identities=41% Similarity=0.698 Sum_probs=73.7
Q ss_pred CCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 7347999999608986199999718878641308735103898688660406878999963775432039999764
Q gi|254780252|r 2 PKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSE 77 (79)
Q Consensus 2 ~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~ 77 (79)
.+|+|.|+|+|++|+|||+|+++|++|||+|+||++++++|+||||.++|++||+|.|+|||||||+|+|+|+|+.
T Consensus 59 r~k~l~G~Vvs~km~KTv~V~v~~~~~~~kY~k~~~r~kk~~aHd~~~~~k~GD~V~I~e~rPlSKtk~f~V~~vi 134 (142)
T 3bbn_Q 59 AMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI 134 (142)
T ss_dssp -CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEECCCSSSSCCEEECCCS
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEECCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf 3037999999617987099999999975863186632089999898665778999999977777882779999987
No 5
>>3i1m_Q 30S ribosomal protein S17; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_Q* 3e1a_J 3e1c_J 1vs5_Q 3i1o_Q 3i1q_Q 3i1s_Q 3i1z_Q 3i21_Q 2qal_Q* 1p6g_Q 1p87_Q 2aw7_Q 2avy_Q 2i2u_Q 2i2p_Q* 2qan_Q* 2qb9_Q* 2qbb_Q* 2qbd_Q ... (Q:)
Probab=99.96 E-value=5.9e-30 Score=184.80 Aligned_cols=76 Identities=49% Similarity=0.757 Sum_probs=74.0
Q ss_pred CCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 7347999999608986199999718878641308735103898688660406878999963775432039999764
Q gi|254780252|r 2 PKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSE 77 (79)
Q Consensus 2 ~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~ 77 (79)
.+|+|.|+|+|++|+||++|++++++|||+|+|+++++++|+||||+++|++||+|.|+||||+||+|+|+|+|+.
T Consensus 4 ~~k~~~G~Vvs~km~KTv~V~v~r~~~~~ky~k~~~~~kky~aHd~~~~~~~GD~V~I~e~rPlSK~k~~~v~~Ii 79 (84)
T 3i1m_Q 4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVV 79 (84)
T ss_dssp CCCCBCCBCSCSCSSSCCEEECCCEEECTTTCCEEECCCEEECBCGGGCCCTTCEEEEEECSCCSSSCCEEEEEEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf 5279999999637998499999999975866789885479999799978752449999976768881679999998
No 6
>>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} (A:77-159)
Probab=38.06 E-value=14 Score=17.80 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.1
Q ss_pred CCCCCCCCCCEEEEEEC
Q ss_conf 88660406878999963
Q gi|254780252|r 46 DENNKYKVGDFVSIEES 62 (79)
Q Consensus 46 D~~~~~~~GD~V~i~e~ 62 (79)
=|+..|++||.|.+.+.
T Consensus 11 IPSy~~k~gD~I~ik~k 27 (83)
T 1c05_A 11 IPSYRVKPGQTIAVREK 27 (83)
T ss_dssp CSSCBCCTTCEEEECGG
T ss_pred ECCEEECCCCEEEECCC
T ss_conf 43416217848750200
No 7
>>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} (A:)
Probab=24.91 E-value=51 Score=14.66 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.6
Q ss_pred CCCCCCCCCCEEEEEECCCCCC
Q ss_conf 8866040687899996377543
Q gi|254780252|r 46 DENNKYKVGDFVSIEESAPISK 67 (79)
Q Consensus 46 D~~~~~~~GD~V~i~e~rPiSK 67 (79)
.....++.||.|.| .|||.-
T Consensus 69 ~~d~~L~~GDRVEI--YRPL~~ 88 (97)
T 2hj1_A 69 KLTDVLKEGDRIEI--YRPLLA 88 (97)
T ss_dssp CTTCBCCTTCEEEE--CCCCC-
T ss_pred CCCCCCCCCCEEEE--ECCCCC
T ss_conf 88771789999999--456555
No 8
>>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} (A:1-75)
Probab=23.19 E-value=36 Score=15.47 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=14.8
Q ss_pred CCCCCCCEEEEEECCCCCC
Q ss_conf 6040687899996377543
Q gi|254780252|r 49 NKYKVGDFVSIEESAPISK 67 (79)
Q Consensus 49 ~~~~~GD~V~i~e~rPiSK 67 (79)
.+.++||+|.+...--++|
T Consensus 40 ~ev~vGD~VLVH~G~Ai~k 58 (75)
T 2ot2_A 40 GQPRVGQWVLVHVGFAMSV 58 (75)
T ss_dssp SCBCTTCEEEEETTEEEEE
T ss_pred CCCCCCCEEEEEHHHHHHH
T ss_conf 6467688999963277755
No 9
>>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=22.88 E-value=56 Score=14.44 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=35.4
Q ss_pred EEEEEECCCCEEEEEEEE--EE-ECCC---------CCEEECCCEEEEEC--CCCCCCCCCCEEEEEECCCCCCCEEE
Q ss_conf 999960898619999971--88-7864---------13087351038986--88660406878999963775432039
Q gi|254780252|r 8 GMVVSDKSEKTIIVLVER--RF-SHPR---------FQKTIRRSKRYAVH--DENNKYKVGDFVSIEESAPISKKKSW 71 (79)
Q Consensus 8 G~Vvs~km~KTv~V~v~r--~~-~~~k---------y~K~~~~~kk~~vH--D~~~~~~~GD~V~i~e~rPiSK~K~~ 71 (79)
..|.+-...+...+++-| .. +.-+ --+.++.-.-.-.. +..++.++||++..-+-....++-.|
T Consensus 33 C~V~~G~i~~~~~vrV~R~~~vI~~G~i~SLk~~K~dV~eV~~G~ECGi~l~~~f~d~~~GDiIe~ye~~~~~r~l~W 110 (120)
T 2crv_A 33 CRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEKVEFKPGDQVICYEENKVPTKTSW 110 (120)
T ss_dssp EEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTTSCCCTTEEEEEECCSCCCCCCCC
T ss_pred EEEEECEEECCCCEEEEECCEEEEEEEEHHHHCCCCCCCEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECC
T ss_conf 999808896156548960998999987424200401331015892588996765777888999999999998678616
No 10
>>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} (A:560-620,A:685-739)
Probab=22.09 E-value=33 Score=15.67 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=19.7
Q ss_pred ECCCCCEEECCCEEEEECCCCC
Q ss_conf 7864130873510389868866
Q gi|254780252|r 28 SHPRFQKTIRRSKRYAVHDENN 49 (79)
Q Consensus 28 ~~~ky~K~~~~~kk~~vHD~~~ 49 (79)
+||-|.+|+-|+=++..|||--
T Consensus 4 iHpp~A~YyIRRIRfsk~DPL~ 25 (116)
T 1l1l_A 4 MHFHYGAYLIQRIRFQDSDPLL 25 (116)
T ss_dssp TCCBSCSEEEEEEEEETTCTHH
T ss_pred CCCCHHHHEEEEEECCCCCHHH
T ss_conf 5711431314665326774479
No 11
>>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} (A:1-57)
Probab=21.04 E-value=33 Score=15.71 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=16.7
Q ss_pred ECCCCCCCCCCCEEEEEECCCCC
Q ss_conf 86886604068789999637754
Q gi|254780252|r 44 VHDENNKYKVGDFVSIEESAPIS 66 (79)
Q Consensus 44 vHD~~~~~~~GD~V~i~e~rPiS 66 (79)
+-+|+..+..||.|.+. ..|+|
T Consensus 36 i~~~~~~v~~~d~i~v~-g~~it 57 (57)
T 1vio_A 36 VKSGSVQISQEDEIYFE-DELLT 57 (57)
T ss_dssp CCCTTCEECTTSCEEET-TEECC
T ss_pred CCCCCEECCCCCEEEEE-ECCCC
T ss_conf 15489586887878762-03222
Done!