Query gi|254780252|ref|YP_003064665.1| 30S ribosomal protein S17 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 79
No_of_seqs 106 out of 1566
Neff 5.4
Searched_HMMs 23785
Date Tue May 24 06:21:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780252.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_Q 30S ribosomal protein S 100.0 3.6E-33 1.5E-37 201.6 9.6 77 1-77 1-77 (105)
2 3bbn_Q Ribosomal protein S17; 100.0 1.1E-31 4.6E-36 193.5 9.2 75 3-77 60-134 (142)
3 1qd7_I S17 ribosomal protein; 100.0 2.3E-31 9.5E-36 191.8 10.7 75 3-77 2-76 (89)
4 2zkq_q 40S ribosomal protein S 100.0 3E-30 1.3E-34 185.6 8.5 76 3-78 70-147 (158)
5 3ofo_Q 30S ribosomal protein S 100.0 2.4E-30 1E-34 186.1 5.6 76 3-78 2-77 (80)
6 3i4o_A Translation initiation 50.8 13 0.00055 17.1 4.8 55 1-69 7-71 (79)
7 2hj1_A Hypothetical protein; s 18.9 48 0.002 14.0 2.3 18 47-66 70-87 (97)
8 2ot2_A Hydrogenase isoenzymes 18.8 36 0.0015 14.7 1.3 49 6-67 5-58 (90)
9 2crv_A IF-2MT, translation ini 16.4 55 0.0023 13.6 2.4 65 8-72 33-111 (120)
10 1c05_A Ribosomal protein S4 de 15.9 45 0.0019 14.1 1.2 17 46-62 87-103 (159)
No 1
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=3.6e-33 Score=201.64 Aligned_cols=77 Identities=57% Similarity=0.896 Sum_probs=76.0
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 97347999999608986199999718878641308735103898688660406878999963775432039999764
Q gi|254780252|r 1 MPKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSE 77 (79)
Q Consensus 1 m~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~ 77 (79)
||+|+|.|+|+|++|+||++|.++|+++||+|+|+++++++|+||||+|+|++||+|+|.|||||||+|+|+|+|+.
T Consensus 1 M~kk~l~G~Vvs~km~KTv~V~V~r~~~h~ky~K~~kr~kk~~aHDe~~~~~~GD~V~I~e~rPlSK~K~~~v~~I~ 77 (105)
T 2vqe_Q 1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLV 77 (105)
T ss_dssp -CCCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf 99608999999407997299999999973876779885559999998998999989999988778896879999998
No 2
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=99.97 E-value=1.1e-31 Score=193.50 Aligned_cols=75 Identities=41% Similarity=0.706 Sum_probs=73.0
Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 347999999608986199999718878641308735103898688660406878999963775432039999764
Q gi|254780252|r 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSE 77 (79)
Q Consensus 3 ~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~ 77 (79)
.|+|.|+|+|++|+|||+|+|+|.+|||+|+|+++++++|+||||+|+|++||+|.|.|||||||+|+|+|+|+.
T Consensus 60 ~r~l~G~VVS~km~KTVvV~V~r~~~hpkY~K~ikr~kKy~aHDe~n~~kvGD~V~I~E~RPiSKtKrw~Vv~Iv 134 (142)
T 3bbn_Q 60 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVI 134 (142)
T ss_dssp CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEECCCSSSSCCEEECCCS
T ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf 358999999607987089999999974765386776589999899888999979999988767897889999988
No 3
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=99.97 E-value=2.3e-31 Score=191.77 Aligned_cols=75 Identities=45% Similarity=0.687 Sum_probs=73.7
Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 347999999608986199999718878641308735103898688660406878999963775432039999764
Q gi|254780252|r 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSE 77 (79)
Q Consensus 3 ~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~ 77 (79)
||+|.|+|+|++|+||++|+++|++|||+|+|+++++++|+||||+|+|++||+|.|.|||||||+|+|+|+|+.
T Consensus 2 kk~l~G~VvS~km~KTv~V~v~r~~~h~ky~K~~kr~kk~~aHDe~n~~~~GD~V~I~e~rPiSK~K~~~v~~Ii 76 (89)
T 1qd7_I 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIV 76 (89)
T ss_pred CCEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf 868999999407997399999999974865789996179999998998999979999987768997989999998
No 4
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=99.96 E-value=3e-30 Score=185.58 Aligned_cols=76 Identities=25% Similarity=0.415 Sum_probs=72.3
Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCC--CCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 34799999960898619999971887864130873510389868866--04068789999637754320399997640
Q gi|254780252|r 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENN--KYKVGDFVSIEESAPISKKKSWLVIDSEG 78 (79)
Q Consensus 3 ~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~--~~~~GD~V~i~e~rPiSK~K~~~vve~~~ 78 (79)
.|+|.|+|+|++|+|||+|+++|+++||+|+||++++++|+||||.+ +|++||.|.|+|||||||+|+|+|+|+..
T Consensus 70 Gril~G~VvS~KM~KTvvV~v~~~~~~~KY~Ry~kr~kk~~aHd~~~~~~~k~GD~V~I~EcRPlSKtKrf~Vv~V~k 147 (158)
T 2zkq_q 70 GRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTK 147 (158)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEE
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
T ss_conf 899999999633887679999999951655279995277898477421548999999999777777617799999987
No 5
>3ofo_Q 30S ribosomal protein S17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_Q* 3iy8_Q 2wwl_Q 3ofp_Q 3i1m_Q 1vs7_Q* 3e1a_J 3e1c_J 1vs5_Q 3i1o_Q 3i1q_Q 3i1s_Q 3i1z_Q 3i21_Q 3kc4_Q 3or9_Q 3ora_Q 2qal_Q* 1p6g_Q 1p87_Q ...
Probab=99.96 E-value=2.4e-30 Score=186.09 Aligned_cols=76 Identities=49% Similarity=0.757 Sum_probs=73.6
Q ss_pred CEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 3479999996089861999997188786413087351038986886604068789999637754320399997640
Q gi|254780252|r 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSEG 78 (79)
Q Consensus 3 ~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~~ 78 (79)
+|+|.|+|+|++|+||++|+++|+++||+|+|+++++++|+||||+|+|++||.|.|+|||||||+|+|.|+|+..
T Consensus 2 ~r~l~G~Vvs~km~KTv~V~v~r~~~h~ky~K~~k~~kk~~aHDe~~~~~~GD~V~I~e~rPlSK~K~~~v~~Ii~ 77 (80)
T 3ofo_Q 2 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVE 77 (80)
T ss_dssp CCCBCCBCSCSCSSSCCEEEECCEEECTTTCCEEECCEEEEBCCTTTCSCTTCEEEEEECSCCSSSCCEEEEEEEC
T ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEECEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
T ss_conf 4599999997279971999999999748767799867699999999989999799999877789958799999992
No 6
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis}
Probab=50.84 E-value=13 Score=17.08 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=39.0
Q ss_pred CCCE----EEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCC------CCCCCCCCEEEEEECCCCCCCE
Q ss_conf 9734----7999999608986199999718878641308735103898688------6604068789999637754320
Q gi|254780252|r 1 MPKR----VLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDE------NNKYKVGDFVSIEESAPISKKK 69 (79)
Q Consensus 1 m~~k----~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~------~~~~~~GD~V~i~e~rPiSK~K 69 (79)
|+++ .+.|+|+....+..-.|..+- -....||-+ .....+||.|.+. -+|..-+|
T Consensus 7 makke~~ie~~G~V~e~l~~~~f~V~l~n-------------g~~~~a~i~GkmRk~ri~i~~GD~V~Ve-~~~yd~~k 71 (79)
T 3i4o_A 7 MAKKDGAIEVEGRVVEPLPNAMFRIELEN-------------GHKVLAHISGKMRQHYIRILPEDRVVVE-LSPYDLSR 71 (79)
T ss_dssp -----CCSEEEEEEEEEETTTEEEEEETT-------------SCEEEEEECHHHHHTTCCCCTTCEEEEE-EETTEEEE
T ss_pred CCCCCCEEEEEEEEEEECCCCEEEEEECC-------------CCEEEEEECCHHHHCEEEECCCCEEEEE-ECCCCCCC
T ss_conf 56642519999999998899789999799-------------9999999576364060886699999999-77657894
No 7
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} SCOP: d.15.3.4
Probab=18.87 E-value=48 Score=13.95 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.3
Q ss_pred CCCCCCCCCEEEEEECCCCC
Q ss_conf 86604068789999637754
Q gi|254780252|r 47 ENNKYKVGDFVSIEESAPIS 66 (79)
Q Consensus 47 ~~~~~~~GD~V~i~e~rPiS 66 (79)
.+..++.||.|.| +|||.
T Consensus 70 ld~~L~~GDRVEI--YRPL~ 87 (97)
T 2hj1_A 70 LTDVLKEGDRIEI--YRPLL 87 (97)
T ss_dssp TTCBCCTTCEEEE--CCCCC
T ss_pred CCCCCCCCCEEEE--ECCCC
T ss_conf 8881789999999--45656
No 8
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=18.78 E-value=36 Score=14.65 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=27.5
Q ss_pred EEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEEC---C--CCCCCCCCCEEEEEECCCCCC
Q ss_conf 9999996089861999997188786413087351038986---8--866040687899996377543
Q gi|254780252|r 6 LQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVH---D--ENNKYKVGDFVSIEESAPISK 67 (79)
Q Consensus 6 l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vH---D--~~~~~~~GD~V~i~e~rPiSK 67 (79)
+-|.|++.. +.+++|..... .+..... | +..+.++||+|.+...--+||
T Consensus 5 iP~kVvei~-~~~A~vd~~Gv------------~r~v~l~lv~~~~~~~~~~vGDyVLVH~G~Ai~~ 58 (90)
T 2ot2_A 5 VPGQIRTID-GNQAKVDVCGI------------QRDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSV 58 (90)
T ss_dssp EEEEEEEEC-SSEEEEECSSS------------EEEEECTTTCSBCTTSCBCTTCEEEEETTEEEEE
T ss_pred CCEEEEEEC-CCEEEEEECCC------------EEEEEEEECCCCCCCCCCCCCCEEEEECCHHHHH
T ss_conf 244999985-99799993891------------7999964122666776467788999961464501
No 9
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=16.44 E-value=55 Score=13.62 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=36.7
Q ss_pred EEEEEECCCCEEEEEEEEEE---EC---------CCCCEEECCCEEEEEC-CC-CCCCCCCCEEEEEECCCCCCCEEEE
Q ss_conf 99996089861999997188---78---------6413087351038986-88-6604068789999637754320399
Q gi|254780252|r 8 GMVVSDKSEKTIIVLVERRF---SH---------PRFQKTIRRSKRYAVH-DE-NNKYKVGDFVSIEESAPISKKKSWL 72 (79)
Q Consensus 8 G~Vvs~km~KTv~V~v~r~~---~~---------~ky~K~~~~~kk~~vH-D~-~~~~~~GD~V~i~e~rPiSK~K~~~ 72 (79)
+.|.+-++.+...+++-|-- +. +---+.++.-.-+=.. ++ +.+.++||.+..-+...+.+...|.
T Consensus 33 c~V~~G~i~r~~~vRV~R~~~vI~~G~I~SLk~~K~dV~eV~~G~ECGi~l~~~~~d~~~GD~Ie~ye~~ev~rkl~w~ 111 (120)
T 2crv_A 33 CRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEEKVEFKPGDQVICYEENKVPTKTSWD 111 (120)
T ss_dssp EEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCTTSCCCTTEEEEEECCSCCCCCCCCC
T ss_pred EEEEECEEECCCEEEEEECCEEEEEEEECHHCCCCCCCCEECCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEECC
T ss_conf 9998498964985899989999998387005035223132469805889968778778899899999999984685069
No 10
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=15.93 E-value=45 Score=14.12 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.0
Q ss_pred CCCCCCCCCCEEEEEEC
Q ss_conf 88660406878999963
Q gi|254780252|r 46 DENNKYKVGDFVSIEES 62 (79)
Q Consensus 46 D~~~~~~~GD~V~i~e~ 62 (79)
-|+-.|++||.|.+.|.
T Consensus 87 ipS~~vk~gD~I~~~~k 103 (159)
T 1c05_A 87 IPSYRVKPGQTIAVREK 103 (159)
T ss_dssp CSSCBCCTTCEEEECGG
T ss_pred ECCEECCCCCEEEECCC
T ss_conf 25677489989873210
Done!