HHSEARCH alignment of GI: 254780252 and SCOP domain: d1ripa_

Alignment

Probab=99.95  E-value=2.5e-31  Score=190.24  Aligned_cols=76  Identities=45%  Similarity=0.675  Sum_probs=73.7

Q ss_pred             CEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             3479999996089861999997188786413087351038986886604068789999637754320399997640
Q gi|254780252|r    3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESAPISKKKSWLVIDSEG   78 (79)
Q Consensus         3 ~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~~~~~~GD~V~i~e~rPiSK~K~~~vve~~~   78 (79)
                      ||+|.|+|+|++|+||++|+++|+++||+|+|+++++++|+||||+|+|++||.|.|.|||||||+|+|.|+|+..
T Consensus         2 rk~~~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~kr~kk~~aHd~~~~~~~GD~V~I~e~rPlSK~K~~~v~~Ii~   77 (81)
T d1ripa_           2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVE   77 (81)
T ss_dssp             CSCBCCEESCCCSSSCSCCCBCCSCCCSCSSSCCCCSBCCCCCCCSTTCSSCEECCBCCCCCSSSCCCCCCCCCBS
T ss_pred             CCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEH
T ss_conf             8599999996179973999999999757467898860899999999888648899999866789976599999855

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Bacillus stearothermophilus [TaxId: 1422]