RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780252|ref|YP_003064665.1| 30S ribosomal protein S17
[Candidatus Liberibacter asiaticus str. psy62]
         (79 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
          thermophilus [TaxId: 274]}
          Length = 100

 Score = 93.6 bits (233), Expect = 4e-21
 Identities = 43/74 (58%), Positives = 55/74 (74%)

Query: 2  PKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEE 61
          PK+VL G+VVSDK +KT+ VLVER+F HP + K I+RSK+Y  HD   KYK+GD V I E
Sbjct: 1  PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIE 60

Query: 62 SAPISKKKSWLVID 75
          S PISK+K + V+ 
Sbjct: 61 SRPISKRKRFRVLR 74


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 37/72 (51%), Positives = 49/72 (68%)

Query: 4  RVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEESA 63
          R LQG VVSDK EK+I+V +ER   HP + K I+R+ +  VHDENN+  +GD V I E  
Sbjct: 1  RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECR 60

Query: 64 PISKKKSWLVID 75
          P+SK KSW ++ 
Sbjct: 61 PLSKTKSWTLVR 72


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query: 3  KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEES 62
          ++V  G VVSDK +KTI VLVE    HP + K ++ SK+Y  HDE+N+ KVGD V I E+
Sbjct: 2  RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMET 61

Query: 63 APISKKKSWLVID 75
           P+S  K + +++
Sbjct: 62 RPLSATKRFRLVE 74


>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase
           {Alicyclobacillus acidocaldarius [TaxId: 405212]}
          Length = 271

 Score = 25.8 bits (56), Expect = 1.2
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 28  SHPRFQKTIRRSKRYAVHDE 47
            HP F K     + Y V  +
Sbjct: 243 QHPAFIKGWEGLELYGVELD 262


>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
           nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
          Length = 327

 Score = 23.9 bits (51), Expect = 3.9
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 7   QGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRY 42
           +G  V   +E   +  V R      F   + RS R 
Sbjct: 291 EGATVRTDAENYPLTFVARNPEAEFFLDMLLRSARA 326


>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod
           (Gadus callarias) [TaxId: 8053]}
          Length = 199

 Score = 23.7 bits (50), Expect = 4.5
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 40  KRYAVHDENNKYKVGDFVSIEESAPIS 66
            +Y V ++    K+   V ++E     
Sbjct: 148 SQYTVVNQIAVAKIDPSVKLDEFITHR 174


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 1207

 Score = 23.3 bits (49), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 60 EESAPISKKKSWLVIDS 76
          +ESAPI+ + SW VI +
Sbjct: 3  DESAPITAEDSWAVISA 19


>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 240

 Score = 23.1 bits (49), Expect = 6.8
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 27  FSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIE 60
           + HP   K I  + R+A      +   G+   +E
Sbjct: 203 YHHPDVLKVIANAVRWAAPVNRGEIVFGNVKPLE 236


>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse
           (Mus musculus), class II [TaxId: 10090]}
          Length = 202

 Score = 22.9 bits (48), Expect = 7.0
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 42  YAVHDENNKYKVGDFVSIEESAPI 65
           Y V  E N  +V D   ++     
Sbjct: 153 YTVVSEANLARVDDEFDLDLLVTH 176


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,139
Number of extensions: 10075
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 14
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)