Query gi|254780253|ref|YP_003064666.1| ribosomal protein L29 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 67 No_of_seqs 100 out of 1117 Neff 5.8 Searched_HMMs 33803 Date Tue May 24 11:23:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780253.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1r73_A TM1492, 50S ribosomal 99.8 5.2E-20 1.6E-24 139.7 8.6 65 2-66 1-65 (66) 2 >1vq8_V 50S ribosomal protein 99.8 7.6E-20 2.2E-24 138.8 8.7 66 1-66 3-69 (71) 3 >3bbo_Z Ribosomal protein L29; 99.8 6.1E-20 1.8E-24 139.3 6.8 66 1-66 64-129 (173) 4 >2zjr_V 50S ribosomal protein 99.8 6.5E-20 1.9E-24 139.2 6.2 65 2-66 1-65 (67) 5 >2go5_5 Ribosomal protein L35; 99.8 7.4E-19 2.2E-23 132.8 8.3 66 1-66 5-70 (124) 6 >2zkr_v 60S ribosomal protein 99.8 1.7E-18 4.9E-23 130.8 8.4 66 1-66 3-69 (123) 7 >3i1n_Y 50S ribosomal protein 99.8 1.7E-19 5E-24 136.7 2.5 62 2-63 1-62 (63) 8 >3jyw_X 60S ribosomal protein 99.7 6.1E-18 1.8E-22 127.4 1.7 64 1-66 2-65 (86) 9 >2wwb_N 60S ribosomal protein 99.6 1E-16 3E-21 120.1 4.4 64 1-66 3-66 (120) 10 >2j01_2 50S ribosomal protein 99.6 1.4E-19 4.3E-24 137.1 -10.4 66 1-66 7-72 (72) 11 >2wq1_A General control protei 28.3 27 0.00079 16.3 1.4 23 39-61 11-33 (33) 12 >3d6k_A Putative aminotransfer 22.8 37 0.0011 15.4 1.3 31 3-33 2-32 (160) 13 >3c3f_A Alpha/beta peptide wit 22.1 57 0.0017 14.3 2.3 20 42-61 15-34 (34) 14 >2bni_A General control protei 20.3 62 0.0018 14.1 2.2 21 41-61 14-34 (34) No 1 >>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} (A:) Probab=99.81 E-value=5.2e-20 Score=139.71 Aligned_cols=65 Identities=32% Similarity=0.455 Sum_probs=63.3 Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 88899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) ||++|||++|.+||.+++.+++++||+||||+++||++|||+|+.+||+||||+||++|++.++. T Consensus 1 MK~~elr~~s~~EL~~~l~~lk~elf~Lr~q~~~~~l~np~~ir~~Rk~IARi~Tvl~ek~~~~~ 65 (66) T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRERELGIR 65 (66) T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTT T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 98898874899999999999999999999999878886728999989999999999999986667 No 2 >>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (V:) Probab=99.81 E-value=7.6e-20 Score=138.75 Aligned_cols=66 Identities=30% Similarity=0.405 Sum_probs=63.8 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999-999537865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLR-FQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lr-fq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) |||++|||++|++||.+.+.+++.+||+|| ||+++|+++|||+|+.+||+||||+||++|+..++. T Consensus 3 ~mk~~elr~~s~eeL~~~l~elk~elf~LR~~q~a~g~l~n~~~i~~~Rr~IARi~Til~er~~~~~ 69 (71) T 1vq8_V 3 VLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQE 69 (71) T ss_dssp CSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--- T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 5769999869999999999999999999999999718877708999999999999999999986052 No 3 >>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (Z:) Probab=99.80 E-value=6.1e-20 Score=139.33 Aligned_cols=66 Identities=27% Similarity=0.416 Sum_probs=63.5 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) ||+++|||+||++||.++|.++++|||+||||+++||++|||+|+.+||+||||+||++|+..+++ T Consensus 64 ~mk~~ElR~lS~eEL~~~l~eLk~ELf~LRfq~~tgqlen~~~ik~vRK~IARi~Tvl~Er~~~~~ 129 (173) T 3bbo_Z 64 EAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEG 129 (173) T ss_dssp SSCHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC--- T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 657999980899999999999999999999999867776407999999999999999999999998 No 4 >>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (V:) Probab=99.80 E-value=6.5e-20 Score=139.15 Aligned_cols=65 Identities=28% Similarity=0.506 Sum_probs=63.1 Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 88899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) ||++|||++|++||.+++.+++++||+||||+++||++|||+|+.+||+||||+||++|+..++. T Consensus 1 MK~~elr~~s~eeL~~~l~elk~elf~Lr~q~~~g~l~n~~~ir~~Rk~IARi~Tvl~er~~~~~ 65 (67) T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGE 65 (67) T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 98898875899999999999999999999999877887638999989999999999999987653 No 5 >>2go5_5 Ribosomal protein L35; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_5 (5:) Probab=99.78 E-value=7.4e-19 Score=132.85 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=63.2 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) .||++|||++|.+||.++|.+++.|||+||||+++|+++|||+|+.+||+||||+||++|++.++. T Consensus 5 kmK~~ELR~ks~eEL~~~L~eLK~EL~~LR~qkatg~~~k~~kIr~vRK~IARilTVlnekqk~~~ 70 (124) T 2go5_5 5 KVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQL 70 (124) T ss_dssp CSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSCCCSCTHHHHHHHHHHHHHHHHHHHHTC--- T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 234999971999999999999999999988999862356516999999999999999869999999 No 6 >>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (v:) Probab=99.76 E-value=1.7e-18 Score=130.78 Aligned_cols=66 Identities=29% Similarity=0.371 Sum_probs=62.7 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999999537-865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASG-QIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~g-ql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) .|+++|||++|.+||.++|.+|+.|||+||||+++| +++|||+|+.+||+||||+||++|+..++. T Consensus 3 kmK~~eLR~~s~eEL~~~L~eLK~EL~~LR~qk~tG~~~~k~skIr~vRK~IARilTV~~ek~r~~~ 69 (123) T 2zkr_v 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL 69 (123) T ss_dssp -CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC----- T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6778999739999999999999999999999999735333418999999999999999969999999 No 7 >>3i1n_Y 50S ribosomal protein L29; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_W 1p86_W 1vs8_X 2aw4_X 2awb_X 1vs6_X 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* 2qp1_X* ... (Y:) Probab=99.76 E-value=1.7e-19 Score=136.66 Aligned_cols=62 Identities=35% Similarity=0.650 Sum_probs=60.4 Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88899972999999999999999999999999537865469999999999999999999998 Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVF 63 (67) Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~ 63 (67) ||++|||++|++||.+.+.++++|||+||||+++||++|||+|+.+||+||||+||++|++. T Consensus 1 Mk~~elr~~s~~eL~~~l~~lk~el~~Lr~q~~~g~l~n~~~ir~~rk~IARi~Tvl~er~~ 62 (63) T 3i1n_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAG 62 (63) T ss_dssp CCTTTSSSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCSCTHHHHHHHHHHHHHHHTTTTTSC T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 98798773899999999999999999999999878887738999989999999999998855 No 8 >>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (X:) Probab=99.68 E-value=6.1e-18 Score=127.41 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=61.4 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) .|+++|||+||++||.++|.+|++|||+||||+++|| |||+|+.+||+||||+||++|++.++. T Consensus 2 ~mk~~elR~~S~eeL~~~l~eLk~ELf~LR~q~atgq--n~~~ik~vRk~IARilTVl~ek~~~~~ 65 (86) T 3jyw_X 2 GVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP--SLPKIKTVRKSIACVLTVINEQQAAAA 65 (86) T ss_dssp CSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTCC--CHHHHTCCSTTTHHHHTTTTHHHHHHH T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9777999729999999999999999999999998788--847999999999999999910012101 No 9 >>2wwb_N 60S ribosomal protein L35; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 1s1i_X 2wwa_N 2ww9_N (N:) Probab=99.64 E-value=1e-16 Score=120.14 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=60.9 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) -|++.|||++|.+||.++|.+|+.|||+||||+++|+ |||+|+.+|++||||+||++|+..++. T Consensus 3 kmKa~eLR~~s~eEL~kqL~eLK~EL~~LR~qk~Tg~--~~skIk~vRK~IARvlTV~nekq~~~l 66 (120) T 2wwb_N 3 GVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP--SLPKIKTVRKSIACVLTVINEQQREAV 66 (120) T ss_dssp SCSSHHHHTCCSHHHHHHHHHHHHHHHHTCSSCCCSC--CCHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7878999719999999999999999999899999788--807899999999999999849999999 No 10 >>2j01_2 50S ribosomal protein L29; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (2:) Probab=99.64 E-value=1.4e-19 Score=137.08 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=63.2 Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 988899972999999999999999999999999537865469999999999999999999998532 Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67) Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67) .||++|||++|++||.+.+.+++++||+||||+++||++|||+|+.+||+||||+||++|++.++. T Consensus 7 kmk~~elr~~s~~EL~~~l~elk~eLf~Lr~q~~tg~l~n~~~ir~~Rk~IARi~Tvl~er~~~~a 72 (72) T 2j01_2 7 RKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQNA 72 (72) T ss_dssp -----CCTTTHHHHHHHHHHHHHHHSSSSCCTTSSTTTGGGTTSSSSSCCCCCCC----------- T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 876999985999999999999999999999999877886638999999999999999999863559 No 11 >>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A 1zik_A ... (A:) Probab=28.29 E-value=27 Score=16.27 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=17.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 54699999999999999999999 Q gi|254780253|r 39 EKPFRMREVSRDIARIKTMMNSR 61 (67) Q Consensus 39 ~np~~ir~~Rk~IARi~Tvl~er 61 (67) +..|+|-.+--.|||++-.+.|| T Consensus 11 e~lskiyh~eneiar~kkliger 33 (33) T 2wq1_A 11 ENTSKIYHNTNEIARNTKLVGER 33 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999998689999999885479 No 12 >>3d6k_A Putative aminotransferase; APC82464, structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} (A:1-58,A:321-422) Probab=22.79 E-value=37 Score=15.43 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=25.9 Q ss_pred CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8899972999999999999999999999999 Q gi|254780253|r 3 KFKDISVMSIDQLTEKLIQLKKDQMSLRFQK 33 (67) Q Consensus 3 k~~elr~~s~~eL~~~l~~l~~el~~lrfq~ 33 (67) +.+.+.+||.+||.....++..++-.++-+. T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (160) T 3d6k_A 2 NAXSLKDYDAARLAQVREEVTAKYAELKAKN 32 (160) T ss_dssp ----------------CHHHHHHHHHHHHTT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9876575889998760889999999998679 No 13 >>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain sequence on AN (alpha-alpha-alpha-beta)...; helix bundle, foldamer, coiled coil, unknown function; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} (A:) Probab=22.11 E-value=57 Score=14.31 Aligned_cols=20 Identities=20% Similarity=0.392 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999 Q gi|254780253|r 42 FRMREVSRDIARIKTMMNSR 61 (67) Q Consensus 42 ~~ir~~Rk~IARi~Tvl~er 61 (67) +++-.+--.|||++-.+.|| T Consensus 15 sk~yhleneiar~kkliger 34 (34) T 3c3f_A 15 SXLYHXENEXARIXKLLXER 34 (34) T ss_dssp HHHHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99987000899999998539 No 14 >>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} (A:) Probab=20.29 E-value=62 Score=14.08 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 699999999999999999999 Q gi|254780253|r 41 PFRMREVSRDIARIKTMMNSR 61 (67) Q Consensus 41 p~~ir~~Rk~IARi~Tvl~er 61 (67) .|++-.+--.|||++-.+.|| T Consensus 14 LSK~yHieNE~ARikkliger 34 (34) T 2bni_A 14 LSKGHHICNELARIKKLLGER 34 (34) T ss_dssp HHHHHHHHHHHHHHHHHC--- T ss_pred HHHHHHHHHHHHHHHHHHCCC T ss_conf 999998888999999986679 Done!