RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780253|ref|YP_003064666.1| ribosomal protein L29
[Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>gnl|CDD|178971 PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed.
          Length = 66

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 32/59 (54%), Positives = 47/59 (79%)

Query: 3  KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
          K K++  +S+++L EKL++LKK+  +LRFQKA+GQ+E   R+REV RDIARIKT++  R
Sbjct: 2  KAKELRELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLRER 60


>gnl|CDD|129124 TIGR00012, L29, ribosomal protein L29.  called L29 in prokaryotic
          (50S) large subunits and L35 in eukaryotic (60S) large
          subunits.
          Length = 55

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 26/55 (47%), Positives = 40/55 (72%)

Query: 6  DISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNS 60
          ++   S ++L +KL +LKK+   LRFQKA+GQ+ KP R+R+V RDIAR+ T++  
Sbjct: 1  ELREKSKEELAKKLDELKKELFELRFQKATGQLAKPHRIRQVRRDIARLLTVLRE 55


>gnl|CDD|179037 PRK00461, rpmC, 50S ribosomal protein L29; Reviewed.
          Length = 87

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 21/59 (35%), Positives = 43/59 (72%)

Query: 3  KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
           FK++   S+++L + +I+LK +  +LRF+ A+G +++  +++E+ +DIARI T++N R
Sbjct: 1  LFKELRKKSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNER 59


>gnl|CDD|184737 PRK14549, PRK14549, 50S ribosomal protein L29P; Provisional.
          Length = 69

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 2  LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASG-QIEKPFRMREVSRDIARIKTMMN 59
          L+  +I  MS ++  EKL +LK + +  R Q A G   E P R+RE+ R IARI T+  
Sbjct: 4  LRASEIREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62


>gnl|CDD|177359 PHA02310, PHA02310, hypothetical protein.
          Length = 130

 Score = 26.0 bits (57), Expect = 2.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 26  QMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNNS 67
           Q +L FQ+    I   F M ++ RD+A  + +   RVF+  S
Sbjct: 61  QFNLEFQRNYVMIFANFEMVDLDRDMAGDQFIWTGRVFQLES 102


>gnl|CDD|183875 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
          Length = 443

 Score = 25.5 bits (57), Expect = 3.4
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 27  MSLRFQKASGQIEKPFRMREVSRDIARIKT 56
           +S+R+    GQ+   FR +  S DI  I  
Sbjct: 139 LSVRYVPKKGQLLVGFREKN-SSDIVDIDQ 167


>gnl|CDD|184052 PRK13435, PRK13435, response regulator; Provisional.
          Length = 145

 Score = 24.6 bits (54), Expect = 6.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 30  RFQKASGQIEKPFRMREVSRDIARIKTM 57
            F  A G I KP+  R V+R ++ +   
Sbjct: 94  DFAGALGVIAKPYSPRGVARALSYLSAR 121


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.132    0.338 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 985,443
Number of extensions: 45834
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 24
Length of query: 67
Length of database: 5,994,473
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,173,369
Effective search space: 150027701
Effective search space used: 150027701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.0 bits)