RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780253|ref|YP_003064666.1| ribosomal protein L29
[Candidatus Liberibacter asiaticus str. psy62]
(67 letters)
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal
subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} (V:)
Length = 67
Score = 61.5 bits (150), Expect = 4e-11
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+K ++ + +++ KK+ M LRFQ A+GQ+ +P R+R++ R++A++ T+
Sbjct: 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAEL 60
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural
genomics, PSI, protein structure initiative, joint
center for structural genomics; NMR {Thermotoga
maritima} (A:)
Length = 66
Score = 60.8 bits (148), Expect = 6e-11
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+K ++ + ++L L + K+ M LRFQ A GQ++ ++ RDIARIKT++ R
Sbjct: 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRER 60
>3i1n_Y 50S ribosomal protein L29; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1p85_W 1p86_W 1vs8_X
2aw4_X 2awb_X 1vs6_X 2i2v_Y 2j28_X 2i2t_Y* 2qao_X*
2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X
2qox_X 2qoz_X* 2qp1_X* ... (Y:)
Length = 63
Score = 60.8 bits (148), Expect = 7e-11
Identities = 22/60 (36%), Positives = 44/60 (73%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+K K++ S+++L +L+ L ++Q +LR Q ASGQ+++ +++V RD+AR+KT++N +
Sbjct: 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK 60
>2j01_2 50S ribosomal protein L29; ribosome, tRNA, paromomycin,
mRNA, translation; 2.8A {Thermus thermophilus} (2:)
Length = 72
Score = 60.0 bits (146), Expect = 1e-10
Identities = 17/60 (28%), Positives = 38/60 (63%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+ ++ +S +L + + + K++ M LRFQ + GQ+ + ++R++ R IAR+ T++N +
Sbjct: 8 KQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEK 67
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Arabidopsis thaliana}
(Z:)
Length = 173
Score = 59.2 bits (143), Expect = 2e-10
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNS 60
+ K+I + +QL E+++ LK + LR QK++ K R + + +AR+ T+
Sbjct: 64 EAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKRE 123
Query: 61 R 61
R
Sbjct: 124 R 124
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1
protein, flexible fitting; 8.90A {Thermomyces
lanuginosus} (X:)
Length = 86
Score = 57.0 bits (138), Expect = 1e-09
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+K ++ S +QL +L+ LKK+ L+ QK S +++ V + IA + T++N +
Sbjct: 3 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP--SLPKIKTVRKSIACVLTVINEQ 60
>2go5_5 Ribosomal protein L35; SR, SRP, ribosome, translation/RNA
complex; 7.40A {Triticum SP} PDB: 2j37_5 (5:)
Length = 124
Score = 56.7 bits (137), Expect = 1e-09
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+K ++ S D LT++L +LK + LR QK + K R+ ++ + IAR+ T++N++
Sbjct: 6 VKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAK 65
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein
complex, RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} (V:)
Length = 71
Score = 56.5 bits (137), Expect = 1e-09
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLR-FQKASGQIEKPFRMREVSRDIARIKTMMN 59
+L ++I M+ + +L LK + ++ R Q A G E P R++E+ + IARIKT+
Sbjct: 3 VLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 62
Query: 60 SR 61
Sbjct: 63 EE 64
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} (v:)
Length = 123
Score = 54.7 bits (132), Expect = 4e-09
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASG-QIEKPFRMREVSRDIARIKTMMNS 60
+K +D+ ++L ++L LK + LR K +G K ++R V + IAR+ T++N
Sbjct: 4 IKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 63
Query: 61 R 61
Sbjct: 64 T 64
>2wwb_N 60S ribosomal protein L35; ribosome, protein EXIT tunnel,
cotranslational protein translocation, protein
conducting channel; 6.48A {Triticum aestivum} PDB:
1s1i_X 2wwa_N 2ww9_N (N:)
Length = 120
Score = 53.2 bits (128), Expect = 1e-08
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
+K ++ S +QL +L+ LKK+ L+ QK S +++ V + IA + T++N +
Sbjct: 4 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP--SLPKIKTVRKSIACVLTVINEQ 61
>2pff_A Fatty acid synthase subunit alpha,
3-oxoacyl-[acyl-carrier-; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 26.4 bits (58), Expect = 1.6
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 14 QLTEKLIQLKKDQ----MSLRFQKA--SGQIEKPFRM-------REVSRDIARIKTMMNS 60
QL + Q+K +L+ + + + F + E + + +
Sbjct: 32 QLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGN 91
Query: 61 RVFKNNS 67
+K +
Sbjct: 92 DFYKRDP 98
>3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, UBL
conjugation, unknown function; 1.70A {Saccharomyces
cerevisiae} (A:)
Length = 155
Score = 24.8 bits (54), Expect = 4.1
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 41 PFRMREVSRDIARIKTMMN--SRVFKNN 66
PF + E D +I N S+ F +
Sbjct: 50 PFVLHESHEDPEKISDAANSHSKKFVRH 77
>2oqr_A Sensory transduction protein REGX3; response regulator,
winged-helix-turn-helix, DNA-binding, 3D domain
swapping; 2.03A {Mycobacterium tuberculosis H37RV}
(A:102-230)
Length = 129
Score = 24.1 bits (51), Expect = 7.5
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 38 IEKPFRMREVSRDIARIKTMM 58
+ KP+ RE+ IARI+ ++
Sbjct: 1 VTKPYSAREL---IARIRAVL 18
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.132 0.338
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 422,889
Number of extensions: 13805
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 29
Length of query: 67
Length of database: 4,956,049
Length adjustment: 34
Effective length of query: 33
Effective length of database: 3,806,679
Effective search space: 125620407
Effective search space used: 125620407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.1 bits)