RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780253|ref|YP_003064666.1| ribosomal protein L29 [Candidatus Liberibacter asiaticus str. psy62] (67 letters) >d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]} Length = 66 Score = 61.9 bits (151), Expect = 1e-11 Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 3 KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61 K ++ + ++L L + K+ M LRFQ A GQ++ ++ RDIARIKT++ R Sbjct: 2 KASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRER 60 >d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]} Length = 60 Score = 61.5 bits (150), Expect = 2e-11 Identities = 22/59 (37%), Positives = 43/59 (72%) Query: 3 KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61 K K++ S+++L +L+ L ++Q +LR Q ASGQ+++ +++V RD+AR+KT++N + Sbjct: 2 KAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK 60 >d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 65 Score = 60.0 bits (146), Expect = 6e-11 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLR-FQKASGQIEKPFRMREVSRDIARIKTMMN 59 +L ++I M+ + +L LK + ++ R Q A G E P R++E+ + IARIKT+ Sbjct: 2 VLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 61 Query: 60 SR 61 Sbjct: 62 EE 63 >d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]} Length = 66 Score = 59.6 bits (145), Expect = 6e-11 Identities = 17/60 (28%), Positives = 36/60 (60%) Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61 +K ++ + +++ KK+ M LRFQ A+GQ+ +P R+R++ R++A++ T+ Sbjct: 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAEL 60 >d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]} Length = 51 Score = 59.2 bits (144), Expect = 9e-11 Identities = 16/51 (31%), Positives = 32/51 (62%) Query: 6 DISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKT 56 + +S +L + + + K++ M LRFQ + GQ+ + ++R++ R IAR+ T Sbjct: 1 EARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLT 51 >d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 Score = 22.7 bits (49), Expect = 9.2 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 5/40 (12%) Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKP 41 LK + + + E L+ LK + +++ +G+ P Sbjct: 16 LKAEKAPKAKVTEAVECLLSLKAE-----YKEKTGKEYVP 50 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.132 0.338 Gapped Lambda K H 0.267 0.0728 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 215,754 Number of extensions: 7670 Number of successful extensions: 64 Number of sequences better than 10.0: 1 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 27 Length of query: 67 Length of database: 2,407,596 Length adjustment: 36 Effective length of query: 31 Effective length of database: 1,913,316 Effective search space: 59312796 Effective search space used: 59312796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (21.9 bits)