>TIGR00279 L10e ribosomal protein L10.e; InterPro: IPR001197 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . A variety of eukaryotic and plant ribosomal L10e proteins can be grouped. This family consists of vertebrate L10 (QM) , plant L10, Caenorhabditis elegans L10, yeast L10 (QSR1) and Methanococcus jannaschii MJ0543.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.

Probab=98.82  E-value=1.1e-08  Score=70.37  Aligned_cols=104  Identities=24%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             CCEEECCCEEECHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCEEEEECCCC---------CCCCCCCCCCEEEEEE
Q ss_conf             03274053132599999999999974267-----846898754986078621544---------0014478811069983
Q gi|254780254|r   33 FALKAQEANRIGSSEIEAARRAISRGMKR-----AGRVWICVFPDVPVTAKPTEV---------RMGKGKGNVEKWVCRV   98 (138)
Q Consensus        33 yGL~a~e~g~it~~qiEaaR~~i~R~lkk-----~gkiwirv~P~~pvTkKp~e~---------RMGkGKG~~~~wv~~V   98 (138)
T Consensus        50 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~d~~~~g~~~~~g~p~g~~~~~  129 (183)
T TIGR00279        50 LSLVAKEPVQLRHNALEAARVAANKYLTRRAGRDGYHLKLRVYPHHILRENKMATGAGADRLSDGMRGAFGKPVGTAARV  129 (183)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCHHCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             20011102454455566677665444443302233224676321233221000000340234433443215642310000


Q ss_pred             CCCEEEEEECC--CCHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             21508999749--799999999999854389517999986
Q gi|254780254|r   99 KPGRILFEIDG--VSEEVARRAFRLGAAKLSVVTKFIQRV  136 (138)
Q Consensus        99 k~G~ilfEi~g--i~~~~a~~al~~a~~KLP~k~k~i~k~  136 (138)
T Consensus       130 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~p~p~~~~~~~  169 (183)
T TIGR00279       130 KPGQKILSVWTKPENFDVAKEALRRAAMKFPGPCKIVLEK  169 (183)
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             2572578886555311368888876554078631578743