HHsearch alignment for GI: 254780254 and conserved domain: cd01433
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=100.00 E-value=3.9e-41 Score=255.74 Aligned_cols=110 Identities=55% Similarity=0.941 Sum_probs=106.6
Q ss_pred CCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCC-CEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCE
Q ss_conf 875312131032740531325999999999999742678-4689875498607862154400144788110699832150
Q gi|254780254|r 24 GGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRA-GRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGR 102 (138)
Q Consensus 24 ~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~-gkiwirv~P~~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ 102 (138)
T Consensus 1 ~~~~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~~~~~~ir~~p~~~vt~k~~~~rMGkGKG~~~~~~~~vk~G~ 80 (112)
T cd01433 1 KGNKLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKKGGKLWIRVFPDHPVTKKPLETRMGKGKGKPEGWVARVKPGQ 80 (112)
T ss_pred CCCEEEECCEEEEECCCCEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 99796304216998608779699999999999874342435999996685627977523536788899008999987998
Q ss_pred EEEEECCCC-HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 899974979-9999999999854389517999
Q gi|254780254|r 103 ILFEIDGVS-EEVARRAFRLGAAKLSVVTKFI 133 (138)
Q Consensus 103 ilfEi~gi~-~~~a~~al~~a~~KLP~k~k~i 133 (138)
T Consensus 81 iifEi~~~~~~~~a~~al~~a~~Klp~~~k~i 112 (112)
T cd01433 81 ILFEVRGVPEEEVAKEALRRAAKKLPIKTKIV 112 (112)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 99999674757999999998863089967979