HHsearch alignment of GI: 254780254 and MMDB domain: 1ffk_F_

>1ffk_F (F:) Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui}
Probab=100.00  E-value=2e-38  Score=239.87  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=112.8

Q ss_pred             CCCCCCCCCCCCCC---CCCCCCCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCCCC-----EEEEEECCC
Q ss_conf             87755106789897---234778753121310----327405313259999999999997426784-----689875498
Q gi|254780254|r    5 PKNTKYPKQFKGRI---KGVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKRAG-----RVWICVFPD   72 (138)
Q Consensus         5 Pk~~KyrK~~kgr~---~g~~~~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk~g-----kiwirv~P~   72 (138)
                      |.+|+ ++|-+|-.   -..-.-||...+++|    +|+|+|++||+++||||||++|+|+|++.+     ++|||+|||
T Consensus        12 p~ytr-~~y~~gvP~~ki~~f~mGn~~~~~~fp~~~~L~a~e~~qI~~~alEAaR~ai~r~l~k~~G~~~f~~~irvfP~   90 (157)
T 1ffk_F           12 PAYTR-REYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF   90 (157)
T ss_pred             CCCCH-HHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             89744-45226899986010546775335677747899986553015999999999999876664276631899995898


Q ss_pred             CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             60786215440014478811069983215089997497999999999998543895179999862
Q gi|254780254|r   73 VPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        73 ~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      . |+++++++|||+|||++++|||+|++|+||||+.++++++|++||++|++|||++|+|+++++
T Consensus        91 ~-v~rk~~~~rMg~gkGkp~~~varVk~G~iifei~g~~e~~ak~Alr~A~~KLp~~~ki~s~~~  154 (157)
T 1ffk_F           91 H-VIREQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSSPA  154 (157)
T ss_pred             C-CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             5-322466674677779875689995589989999826889999999997443898569873268