HHsearch alignment of GI: 254780254 and MMDB domain: 1ffk_F_
>1ffk_F (F:) Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui}
Probab=100.00 E-value=2e-38 Score=239.87 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCCCC-----EEEEEECCC
Q ss_conf 87755106789897---234778753121310----327405313259999999999997426784-----689875498
Q gi|254780254|r 5 PKNTKYPKQFKGRI---KGVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKRAG-----RVWICVFPD 72 (138)
Q Consensus 5 Pk~~KyrK~~kgr~---~g~~~~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk~g-----kiwirv~P~ 72 (138)
|.+|+ ++|-+|-. -..-.-||...+++| +|+|+|++||+++||||||++|+|+|++.+ ++|||+|||
T Consensus 12 p~ytr-~~y~~gvP~~ki~~f~mGn~~~~~~fp~~~~L~a~e~~qI~~~alEAaR~ai~r~l~k~~G~~~f~~~irvfP~ 90 (157)
T 1ffk_F 12 PAYTR-REYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF 90 (157)
T ss_pred CCCCH-HHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 89744-45226899986010546775335677747899986553015999999999999876664276631899995898
Q ss_pred CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 60786215440014478811069983215089997497999999999998543895179999862
Q gi|254780254|r 73 VPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138)
Q Consensus 73 ~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138)
. |+++++++|||+|||++++|||+|++|+||||+.++++++|++||++|++|||++|+|+++++
T Consensus 91 ~-v~rk~~~~rMg~gkGkp~~~varVk~G~iifei~g~~e~~ak~Alr~A~~KLp~~~ki~s~~~ 154 (157)
T 1ffk_F 91 H-VIREQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSSPA 154 (157)
T ss_pred C-CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 5-322466674677779875689995589989999826889999999997443898569873268