HHsearch alignment of GI: 254780254 and MMDB domain: 3i1n_M_

>3i1n_M (M:) 50S ribosomal protein L16; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M 2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* 2qp1_M* ...
Probab=100.00  E-value=0  Score=304.73  Aligned_cols=135  Identities=54%  Similarity=0.968  Sum_probs=131.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             98887755106789897234778753121310327405313259999999999997426784689875498607862154
Q gi|254780254|r    2 LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE   81 (138)
Q Consensus         2 ml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e   81 (138)
                      ||+|++++|+|+|++++.+ .+.+|.|.||+|||+|+|+++|+++||||+|++|+|+|++.|++|++++||.|+|+||+|
T Consensus         1 ml~pk~~k~~k~~~~ki~~-~~~gn~l~~g~~gl~a~e~~~i~~~~lEa~R~~i~r~lk~~~~~~~~~~~~~~vt~k~~~   79 (136)
T 3i1n_M            1 MLQPKRTKFRKMHKGRNRG-LAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLA   79 (136)
T ss_dssp             CCCCSCCSCSCCCCCCCCS-CCSSCSCCSSSEEEECCSCEEECSHHHHHHHHHHHHHHCSCSCEEECCCCCBCCEECCSS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCEECCEEEEEECCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCC
T ss_conf             9888767313566899977-576871100036058885871679999999999997434486599985286889933145


Q ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             40014478811069983215089997497999999999998543895179999862
Q gi|254780254|r   82 VRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        82 ~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      +|||+|||+++||||+|++|+||||++++++++|++||++|++|||++|+||.+++
T Consensus        80 ~rMG~GkG~~~~~~arV~~G~iifei~~~~~~~a~~al~~a~~KLP~~~~iv~~~~  135 (136)
T 3i1n_M           80 VRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTV  135 (136)
T ss_dssp             CCSCSSCCEECCCBEEECTTCEEEEECSSCHHHHHHHHHHHHHHCSSCCEEEECCC
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             60368978871689997589489996698999999999999871898779998625