Query gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 138
No_of_seqs 112 out of 1127
Neff 5.2
Searched_HMMs 23785
Date Tue May 24 10:21:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780254.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_J 50S ribosomal protein L 100.0 0 0 372.6 6.3 137 1-137 1-137 (142)
2 3bbo_O Ribosomal protein L16; 100.0 0 0 364.0 8.9 134 2-135 1-134 (135)
3 3ofq_M 50S ribosomal protein L 100.0 0 0 360.4 5.7 135 2-137 1-135 (136)
4 2ftc_I Mitochondrial ribosomal 100.0 0 0 295.5 11.3 114 18-131 2-118 (118)
5 1ffk_F Ribosomal protein L10E; 100.0 1.8E-38 7.7E-43 239.2 12.0 132 5-138 12-155 (157)
6 2zkr_h 60S ribosomal protein L 100.0 2.8E-36 1.2E-40 226.7 13.8 115 20-134 36-167 (214)
7 1vq8_H 50S ribosomal protein L 100.0 2.1E-36 8.8E-41 227.5 12.0 111 27-137 40-168 (171)
8 2pa2_A 60S ribosomal protein L 100.0 2.5E-35 1E-39 221.3 9.8 104 31-134 17-136 (151)
9 1cmx_A Protein (ubiquitin YUH1 44.5 13 0.00054 17.2 2.7 21 90-110 163-183 (235)
10 1xd3_A Ubiquitin carboxyl-term 40.0 16 0.00066 16.7 2.6 20 91-110 167-186 (230)
11 3a7s_A Ubiquitin carboxyl-term 38.0 17 0.0007 16.6 2.5 21 90-110 161-181 (228)
12 3ihr_A Ubiquitin carboxyl-term 35.9 19 0.00079 16.3 2.5 21 90-110 161-181 (328)
13 2wdt_A Ubiquitin carboxyl-term 35.4 22 0.00092 15.9 2.7 21 90-110 161-181 (232)
14 2etl_A Ubiquitin carboxyl-term 35.2 21 0.00088 16.0 2.6 21 90-110 163-183 (228)
15 3lnn_A Membrane fusion protein 35.0 24 0.00099 15.7 3.8 21 97-117 78-98 (359)
16 1qav_A Alpha-1 syntrophin (res 33.7 5 0.00021 19.5 -0.8 42 91-132 42-88 (90)
17 2q9v_A Membrane-associated gua 29.5 26 0.0011 15.4 2.3 43 90-132 38-85 (90)
18 2eno_A Synaptojanin-2-binding 26.6 20 0.00082 16.2 1.2 33 95-127 63-100 (120)
19 1wi4_A Synip, syntaxin binding 23.5 38 0.0016 14.5 2.3 44 91-134 53-101 (109)
20 1x45_A Amyloid beta (A4) precu 22.7 20 0.00083 16.1 0.7 40 96-135 50-94 (98)
21 2yt7_A Amyloid beta A4 precurs 22.4 38 0.0016 14.5 2.1 37 97-133 55-96 (101)
22 1q3o_A Shank1; PDZ, GKAP, pept 22.0 41 0.0017 14.3 3.3 38 98-135 63-105 (109)
23 2kom_A Partitioning defective 21.5 25 0.001 15.6 1.0 45 91-136 70-119 (121)
24 3e17_A Tight junction protein 20.9 19 0.00078 16.3 0.2 30 96-125 38-72 (88)
25 1vq3_A Phosphoribosylformylgly 20.4 44 0.0019 14.1 4.7 32 95-126 48-80 (94)
26 2fcf_A Multiple PDZ domain pro 20.3 19 0.00082 16.2 0.2 30 96-125 56-90 (103)
27 2uzc_A Human pdlim5, PDZ and L 20.2 41 0.0017 14.4 1.9 32 96-127 43-79 (88)
No 1
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 1nwy_K* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N 1vp0_N 1wki_A ...
Probab=100.00 E-value=0 Score=372.56 Aligned_cols=137 Identities=53% Similarity=0.922 Sum_probs=135.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECC
Q ss_conf 99888775510678989723477875312131032740531325999999999999742678468987549860786215
Q gi|254780254|r 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPT 80 (138)
Q Consensus 1 mml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~ 80 (138)
|||+||+|||+|+|||+++|.++++|.|.||+|||+|+|+|+||++||||||++|+|+|++.|++|||||||.|||+||+
T Consensus 1 mml~PKrtKyrK~~kgr~~g~~~~~~~l~fG~yGl~a~~~g~it~~qiEa~R~~I~r~lkr~gk~wirv~p~~pvTkKp~ 80 (142)
T 2zjr_J 1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPA 80 (142)
T ss_dssp -----CCCSSCCCCCCCCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCSSCCCCCCCCCCCCEECCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCC
T ss_conf 98887754312566899877477888862324135981263342999999999999750328449999789974265665
Q ss_pred CCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 440014478811069983215089997497999999999998543895179999862
Q gi|254780254|r 81 EVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138)
Q Consensus 81 e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138)
|+|||+|||++|||||+|+||+||||++|+++++|++||+++++|||++|+||+|++
T Consensus 81 e~RMGkGKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~aa~KLP~k~k~I~r~~ 137 (142)
T 2zjr_J 81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREV 137 (142)
T ss_dssp SCCCSSSCCTTSEEBCCBCTTEEEECCCSSCSTTTTTHHHHHHHTCSSCEEEECSCC
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 454678888800079997789799997798999999999998752797379997164
No 2
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=0 Score=364.00 Aligned_cols=134 Identities=51% Similarity=0.966 Sum_probs=132.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 98887755106789897234778753121310327405313259999999999997426784689875498607862154
Q gi|254780254|r 2 LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE 81 (138)
Q Consensus 2 ml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e 81 (138)
||+||+|||+|+||++++|.+++++.|.||+|||+|+|+|+|+++||||||++|+|+|++.|++|||||||.|||+||+|
T Consensus 1 ML~PkrtKyrK~~K~r~~g~~~~~~~l~~G~yGl~a~~~g~it~~qiEa~R~~i~r~lkk~gk~wirv~p~~pvTkKp~e 80 (135)
T 3bbo_O 1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAE 80 (135)
T ss_dssp CCCCCCCCCCCCCCCCCCCTTSCCCCCCSSSEEEEESSCCCCCHHHHHHHHHHHHHTTCSSSCCCCCCCCCSCCCCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCC
T ss_conf 98888775146668988874778878864115778711755759999999999998611074699995487121656754
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 400144788110699832150899974979999999999985438951799998
Q gi|254780254|r 82 VRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR 135 (138)
Q Consensus 82 ~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k 135 (138)
+|||+|||++|||||+|++|+||||++|+++++|++||++|++|||++|+||+|
T Consensus 81 ~RMGkGKG~v~~wv~~vk~G~IlfE~~gv~~~~a~~al~~aa~KLP~k~k~V~k 134 (135)
T 3bbo_O 81 TRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp CCSSCCCSCSSCCCCCCCTTCEEEEECSSCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCCCCCCCCHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 546789898567799967895999967999999999999998628940899975
No 3
>3ofq_M 50S ribosomal protein L16; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=100.00 E-value=0 Score=360.43 Aligned_cols=135 Identities=55% Similarity=0.983 Sum_probs=132.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 98887755106789897234778753121310327405313259999999999997426784689875498607862154
Q gi|254780254|r 2 LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE 81 (138)
Q Consensus 2 ml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e 81 (138)
||+||+|||+|+|||+++|.+ +++.|.||+|||+|+|+|+|+++||||||++|+|++++.|++|||||||+|||+||+|
T Consensus 1 mL~PkrtKyrK~~kgr~~g~~-~~~~L~~G~~GL~a~~~g~it~~qiEa~R~~i~r~lkk~gk~wirv~p~~pvTkKp~e 79 (136)
T 3ofq_M 1 MLQPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLA 79 (136)
T ss_dssp CCCCSCCSCSCCCCCCCCSCC-SCCSCSSSSEEECCCSCCEEETTHHHHHHHHHHHHHCSCSCCEECSCCCBCCBCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCEECCCCEEEEECCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCC
T ss_conf 988887752456589887667-5877712433547651868969999999999997465685399996799684757310
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 40014478811069983215089997497999999999998543895179999862
Q gi|254780254|r 82 VRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138)
Q Consensus 82 ~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138)
+|||+|||++|||||+|++|+||||++|+++++|++||+++++|||++|+||+|++
T Consensus 80 ~RMGkGKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~aa~KLP~k~k~i~k~~ 135 (136)
T 3ofq_M 80 VRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTV 135 (136)
T ss_dssp CCSSSSCCCBCCCEEECCTTCCCEEECSSCTTTTTTHHHHTGGGSSSCCCEECCCC
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 43679989750689997799299996799999999999999863898679998635
No 4
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=100.00 E-value=0 Score=295.51 Aligned_cols=114 Identities=32% Similarity=0.478 Sum_probs=110.2
Q ss_pred CCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHC--CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 723477875312131032740531325999999999999742--678468987549860786215440014478811069
Q gi|254780254|r 18 IKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM--KRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWV 95 (138)
Q Consensus 18 ~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~l--kk~gkiwirv~P~~pvTkKp~e~RMGkGKG~~~~wv 95 (138)
++|.++++|+|+||+|||+|+|+++|+++||||||++|+|+| ++++++|||+|||+|||+||+|+|||+|||+|||||
T Consensus 2 ~~G~~~~~~~l~~G~~GL~a~e~g~i~~~qiEaaR~~i~R~l~~k~~~kiwirv~P~~pvTkKp~e~RMGkGKG~i~~wv 81 (118)
T 2ftc_I 2 IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYV 81 (118)
T ss_pred CCCCCCCCCEEEECCEEEEEEECCEECHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCEEE
T ss_conf 87746779887404126898448689599999999999876200577489998489944050762254569999834689
Q ss_pred EEECCCEEEEEECCCCH-HHHHHHHHHHHHHCCCEEE
Q ss_conf 98321508999749799-9999999998543895179
Q gi|254780254|r 96 CRVKPGRILFEIDGVSE-EVARRAFRLGAAKLSVVTK 131 (138)
Q Consensus 96 ~~Vk~G~ilfEi~gi~~-~~a~~al~~a~~KLP~k~k 131 (138)
|+|+||+||||++|+++ ++|++||+++++|||++|+
T Consensus 82 a~Vk~G~ilfEi~g~~~~~~ak~al~~aa~KLPiktk 118 (118)
T 2ftc_I 82 TPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 118 (118)
T ss_pred EEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9977997899983789489999999988872797759
No 5
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=1.8e-38 Score=239.24 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCCCC-----EEEEEECCC
Q ss_conf 877551067898972---34778753121310----327405313259999999999997426784-----689875498
Q gi|254780254|r 5 PKNTKYPKQFKGRIK---GVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKRAG-----RVWICVFPD 72 (138)
Q Consensus 5 Pk~~KyrK~~kgr~~---g~~~~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk~g-----kiwirv~P~ 72 (138)
|.+|+ ++|.+|-.. ..-.-||...+++| .|+|+|+++|+++||||||++|+|+|++.+ ++|||+|||
T Consensus 12 ~~ytr-~~yi~gvP~~kI~~f~mGn~~a~~~f~~~~~L~a~e~~~I~~~alEAaR~ai~r~l~k~gG~~~y~~~irvfP~ 90 (157)
T 1ffk_F 12 PAYTR-REYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF 90 (157)
T ss_pred CCCCC-CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 89864-23358999530053245565335778817999986652224899999999999999986275652799996996
Q ss_pred CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 607862154400144788110699832150899974979999999999985438951799998629
Q gi|254780254|r 73 VPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE 138 (138)
Q Consensus 73 ~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~~ 138 (138)
+|++++ .|+|||+|||++++|||+|++|++|||+.++++++|++||++|++|||++|+|+++.++
T Consensus 91 ~~~r~~-~~~rMg~gkGk~~~~~ArVk~G~iifei~~~~~~~ak~Al~~a~~KLp~~~kI~s~p~~ 155 (157)
T 1ffk_F 91 HVIREQ-DGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSSPAG 155 (157)
T ss_pred HHHCCC-CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 241225-65555666677767999978998899998257899999999973559996599851588
No 6
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I 3jyw_I
Probab=100.00 E-value=2.8e-36 Score=226.75 Aligned_cols=115 Identities=19% Similarity=0.150 Sum_probs=103.8
Q ss_pred CCCCCCCCCCHH-HCCEEECCCEEECHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCEEEEECC---------CCCC
Q ss_conf 347787531213-1032740531325999999999999742-----678468987549860786215---------4400
Q gi|254780254|r 20 GVAKGGSRICFG-NFALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWICVFPDVPVTAKPT---------EVRM 84 (138)
Q Consensus 20 g~~~~~~~l~fG-~yGL~a~e~g~it~~qiEaaR~~i~R~l-----kk~gkiwirv~P~~pvTkKp~---------e~RM 84 (138)
.++.+++...|+ .+.|+|+|+++|+++||||||++++|+| ++++++|||+|||+|+|.+|. |+||
T Consensus 36 mGn~k~~~~~f~~~~~L~a~e~~qI~~~alEAARia~nr~l~k~~Gk~~~~l~iRv~P~~~lr~nk~~s~aGAdrl~~gM 115 (214)
T 2zkr_h 36 LGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGM 115 (214)
T ss_dssp EECSSSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSS
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 67776664535628999876774327889999999999988764165675799996898146752310024555312355
Q ss_pred CCCCCCCCEEEEEECCCEEEEEECCC--CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 14478811069983215089997497--999999999998543895179999
Q gi|254780254|r 85 GKGKGNVEKWVCRVKPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFIQ 134 (138)
Q Consensus 85 GkGKG~~~~wv~~Vk~G~ilfEi~gi--~~~~a~~al~~a~~KLP~k~k~i~ 134 (138)
|+|||+|++|+|+|++|++|||+.+. +++.|++||++|++|||++|+||.
T Consensus 116 g~gkGkp~~~aArV~~G~iifei~~~~~~~~~akeALrrA~~KLP~~~kIvv 167 (214)
T 2zkr_h 116 RGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHI 167 (214)
T ss_dssp TTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 6787887769998559988999985167889999999986054899759999
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00 E-value=2.1e-36 Score=227.46 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=99.9
Q ss_pred CCCHH-HCCEEECCCEEECHHHHHHHHHHHHHHCCCC------CEEEEEECCCCEEEEECC---------CCCCCCCCCC
Q ss_conf 31213-1032740531325999999999999742678------468987549860786215---------4400144788
Q gi|254780254|r 27 RICFG-NFALKAQEANRIGSSEIEAARRAISRGMKRA------GRVWICVFPDVPVTAKPT---------EVRMGKGKGN 90 (138)
Q Consensus 27 ~l~fG-~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~------gkiwirv~P~~pvTkKp~---------e~RMGkGKG~ 90 (138)
...|. .+.|+++|+++|+++||||||++++|+|++. +++|||+|||+|||.+|. |+|||+|||+
T Consensus 40 ~~~f~~~~~L~a~e~~~i~~~~iEAaR~a~~r~~~k~~Gk~g~~~~~irvfP~~~~~~kp~~~~agAdr~~~gM~~~~Gk 119 (171)
T 1vq8_H 40 ADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGK 119 (171)
T ss_dssp STTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCE
T ss_pred CCCCCEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECHHHHHHHHHHHCCCCCCCCCC
T ss_conf 56677489999877610458999999999999988752866760699995798103505445321110012366777788
Q ss_pred CCEEEEEECCCEEEEEECCCCH--HHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 1106998321508999749799--9999999998543895179999862
Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGVSE--EVARRAFRLGAAKLSVVTKFIQRVV 137 (138)
Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi~~--~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138)
+++|||+|++|+||||++++++ +.|++||++|++|||++|+||....
T Consensus 120 p~~~aArVk~G~vlfei~~~~~~~~~akeALr~A~~KLP~ktkIvv~~~ 168 (171)
T 1vq8_H 120 IVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA 168 (171)
T ss_dssp EEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred CCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 5579999538988999972431489999999987432999879999757
No 8
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=100.00 E-value=2.5e-35 Score=221.31 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=97.8
Q ss_pred HHCCEEECCCEEECHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCEEEEECCCCCCCC---------CCCCCCEEEE
Q ss_conf 31032740531325999999999999742-----678468987549860786215440014---------4788110699
Q gi|254780254|r 31 GNFALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWICVFPDVPVTAKPTEVRMGK---------GKGNVEKWVC 96 (138)
Q Consensus 31 G~yGL~a~e~g~it~~qiEaaR~~i~R~l-----kk~gkiwirv~P~~pvTkKp~e~RMGk---------GKG~~~~wv~ 96 (138)
....|+|+|+++|+++||||||++++|+| +.++++|||+|||+|+|.+|.++|||+ |||+|++|+|
T Consensus 17 ~~~~Lva~e~~qi~~~alEAaR~a~nr~l~k~~gk~~~~~~IrvfP~~~lr~~~~~~~aGadrl~~gMr~~~Gkp~g~aA 96 (151)
T 2pa2_A 17 LCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA 96 (151)
T ss_dssp EEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCEEEE
T ss_conf 78999887744436889999999999999985076774799997687120327545303743022155567788646999
Q ss_pred EECCCEEEEEECCC--CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 83215089997497--999999999998543895179999
Q gi|254780254|r 97 RVKPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFIQ 134 (138)
Q Consensus 97 ~Vk~G~ilfEi~gi--~~~~a~~al~~a~~KLP~k~k~i~ 134 (138)
+|++|+||||+.++ +.+.|++||++|++|||++|+||-
T Consensus 97 rVk~G~ilfei~g~~~~~~~AkeALr~Aa~KLP~ktkIvv 136 (151)
T 2pa2_A 97 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHI 136 (151)
T ss_dssp EECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEE
T ss_pred EECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9628988999983355889999999986353899779999
No 9
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=44.47 E-value=13 Score=17.20 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.8
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
...|+||.|+.+-.|+|++|.
T Consensus 163 ~~~HFIafV~~~G~LyELDG~ 183 (235)
T 1cmx_A 163 TNLHYITYVEENGGIFELDGR 183 (235)
T ss_dssp CSEEEEEEEECSSEEEEECTT
T ss_pred CCEEEEEEEEECCEEEEECCC
T ss_conf 773899999889989980688
No 10
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=39.98 E-value=16 Score=16.71 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.4
Q ss_pred CCEEEEEECCCEEEEEECCC
Q ss_conf 11069983215089997497
Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi 110 (138)
-.|+||.|+.+-.|+|++|.
T Consensus 167 ~~HFI~fV~~~G~lyELDG~ 186 (230)
T 1xd3_A 167 DLHFIALVHVDGHLYELDGR 186 (230)
T ss_dssp CEEEEEEEEETTEEEEECTT
T ss_pred CEEEEEEEEECCEEEECCCC
T ss_conf 52589999869999981599
No 11
>3a7s_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; ubiquitin-proteasome pathway, alternative splicing, polymorphism, protease, proteasome; 2.20A {Homo sapiens}
Probab=37.99 E-value=17 Score=16.57 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.7
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
...|++|.|+.+--|+|++|.
T Consensus 161 ~~~HFI~fV~~~G~lyELDG~ 181 (228)
T 3a7s_A 161 DAFHFVSYVPVNGRLYELDGL 181 (228)
T ss_dssp -CCEEEEEEEETTEEEEEETT
T ss_pred CCEEEEEEEECCCEEEEECCC
T ss_conf 534789998329969993488
No 12
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=35.93 E-value=19 Score=16.27 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.9
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
...|+||.|+.+--|+|++|.
T Consensus 161 ~~~HFIafV~~~G~LyELDG~ 181 (328)
T 3ihr_A 161 DAFHFVSYVPVNGRLYELDGL 181 (328)
T ss_dssp -CEEEEEEEEETTEEEEEETT
T ss_pred CCEEEEEEEEECCEEEEECCC
T ss_conf 662689999649989980389
No 13
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UCH-L superfamily, cystein proteinase, peptidase_C12, hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=35.38 E-value=22 Score=15.90 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.8
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
.-.|+||.|+.+--|+|++|.
T Consensus 161 v~~HFI~fV~~~G~LyELDG~ 181 (232)
T 2wdt_A 161 VDTHFIVFVQIEGKIIELDGR 181 (232)
T ss_dssp CCEEEEEEEESSSEEEEECTT
T ss_pred CCCEEEEEEEECCEEEECCCC
T ss_conf 675389999779989982588
No 14
>2etl_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; deubiquitinating thiol hydrolase, ligase; 2.40A {Homo sapiens} SCOP: d.3.1.6 PDB: 3kw5_A 3irt_A 3kvf_A 3ifw_A
Probab=35.21 E-value=21 Score=16.01 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=19.0
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
...|+||.|..+--|+|++|.
T Consensus 163 ~~~HFI~fV~~~G~lyELDG~ 183 (228)
T 2etl_A 163 VNFHFILFNNVDGHLYELDGR 183 (228)
T ss_dssp CCEEEEEEEEETTEEEEECTT
T ss_pred CCEEEEEEEEECCEEEEECCC
T ss_conf 654899999769979994477
No 15
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=35.02 E-value=24 Score=15.70 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=11.9
Q ss_pred EECCCEEEEEECCCCHHHHHH
Q ss_conf 832150899974979999999
Q gi|254780254|r 97 RVKPGRILFEIDGVSEEVARR 117 (138)
Q Consensus 97 ~Vk~G~ilfEi~gi~~~~a~~ 117 (138)
.|+.|++||+++......+..
T Consensus 78 ~V~kGq~L~~id~~el~~a~~ 98 (359)
T 3lnn_A 78 EVKAGDVLFTIDSADLAQANS 98 (359)
T ss_dssp EECTTCEEEEEECSSHHHHHH
T ss_pred EECCCCEEEEECHHHHHHHHH
T ss_conf 988999899998599999999
No 16
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein/oxidoreductase complex; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=33.73 E-value=5 Score=19.54 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=28.1
Q ss_pred CCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 11069983215089997497-----9999999999985438951799
Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF 132 (138)
Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~ 132 (138)
+.+..-.+++|..|.+|+|. +.+.|.++|+.+...+-+..+.
T Consensus 42 ~A~~~G~L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~~ 88 (90)
T 1qav_A 42 AADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY 88 (90)
T ss_dssp HHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEE
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEE
T ss_conf 79982999989999999999999998999999998089959999999
No 17
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=29.45 E-value=26 Score=15.45 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=30.6
Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 811069983215089997497-----9999999999985438951799
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF 132 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~ 132 (138)
++.+-.-.+.+|..|.+++|. +.+.+.+.|+.+....++...+
T Consensus 38 g~A~~~G~L~~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~~~~v~L~V 85 (90)
T 2q9v_A 38 GAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTV 85 (90)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 989975997899999999999989998999999998589998899999
No 18
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.56 E-value=20 Score=16.18 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=24.7
Q ss_pred EEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCC
Q ss_conf 9983215089997497-----99999999999854389
Q gi|254780254|r 95 VCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLS 127 (138)
Q Consensus 95 v~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP 127 (138)
.-.+++|..|++|+|. +.+.|.+.|+.+...+.
T Consensus 63 ~g~l~~GD~Il~VNg~~v~~~~~~e~~~~ik~~~~~v~ 100 (120)
T 2eno_A 63 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVS 100 (120)
T ss_dssp SCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 39999999999999999889979999999973898599
No 19
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=23.51 E-value=38 Score=14.52 Aligned_cols=44 Identities=20% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 11069983215089997497-----999999999998543895179999
Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQ 134 (138)
Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~ 134 (138)
+.+..-.+.+|..|.+|+|. +.+.|...|+.+....-....+..
T Consensus 53 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~llk~~~~~~~~~v~~~~ 101 (109)
T 1wi4_A 53 DCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101 (109)
T ss_dssp HHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEE
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 7998698778999999999998899799999999877799886799998
No 20
>1x45_A Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11); PDZ domain, neuron-specific XII protein, adapter protein XII alpha; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.70 E-value=20 Score=16.15 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=28.7
Q ss_pred EEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 983215089997497-----9999999999985438951799998
Q gi|254780254|r 96 CRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQR 135 (138)
Q Consensus 96 ~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~k 135 (138)
-.+.+|..|.+++|. +.+.|.+.|+.+.....+..+++..
T Consensus 50 G~l~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~~~v~l~i~~~ 94 (98)
T 1x45_A 50 GKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSG 94 (98)
T ss_dssp CSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEEECC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 999999999999999988998999999997399984899999669
No 21
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=22.35 E-value=38 Score=14.53 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=27.0
Q ss_pred EECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 83215089997497-----99999999999854389517999
Q gi|254780254|r 97 RVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFI 133 (138)
Q Consensus 97 ~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i 133 (138)
.+++|..|.+|+|. +.+.|.+.|+.+.....+...++
T Consensus 55 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~l~v~ 96 (101)
T 2yt7_A 55 ALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIV 96 (101)
T ss_dssp SCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 998799999999999889989999999974999998999998
No 22
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A
Probab=22.03 E-value=41 Score=14.35 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=26.8
Q ss_pred ECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 3215089997497-----9999999999985438951799998
Q gi|254780254|r 98 VKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQR 135 (138)
Q Consensus 98 Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~k 135 (138)
+++|..|.|++|. +.+.|.+.++.+...+-+...-..+
T Consensus 63 L~~GD~Il~vng~~v~~~~~~~v~~~i~~~~~~v~l~V~~~~~ 105 (109)
T 1q3o_A 63 LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105 (109)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 9879999999999989998999999998299969999998998
No 23
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=21.49 E-value=25 Score=15.57 Aligned_cols=45 Identities=27% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 11069983215089997497-----99999999999854389517999986
Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQRV 136 (138)
Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~k~ 136 (138)
+....-.+++|..|.+|+|. +.+.|.++|+.+...-.+... |.|.
T Consensus 70 ~A~~~G~L~~GD~Il~VNG~~v~~~t~~ea~~lL~~~~~~~~v~L~-V~R~ 119 (121)
T 2kom_A 70 AAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL-VFRQ 119 (121)
T ss_dssp HHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEE-EEEC
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEE-EECC
T ss_conf 7997194998999999999997899899999999718998989999-9779
No 24
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=20.90 E-value=19 Score=16.30 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred EEECCCEEEEEECCC-----CHHHHHHHHHHHHHH
Q ss_conf 983215089997497-----999999999998543
Q gi|254780254|r 96 CRVKPGRILFEIDGV-----SEEVARRAFRLGAAK 125 (138)
Q Consensus 96 ~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~K 125 (138)
-.+++|..|.+++|. +.+.|...++.+...
T Consensus 38 G~L~~GD~Il~INg~~v~~~s~~ea~~~i~~~~~~ 72 (88)
T 3e17_A 38 GNLHEGDIILKINGTVTENMSLTDARKLIEKSRGK 72 (88)
T ss_dssp CCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
T ss_conf 99998999999999998899899999999879997
No 25
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=20.42 E-value=44 Score=14.15 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.9
Q ss_pred EEEECCCE-EEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 99832150-899974979999999999985438
Q gi|254780254|r 95 VCRVKPGR-ILFEIDGVSEEVARRAFRLGAAKL 126 (138)
Q Consensus 95 v~~Vk~G~-ilfEi~gi~~~~a~~al~~a~~KL 126 (138)
+..|+.|+ +.|++++.+++.|++..+..+.+|
T Consensus 48 v~~VrvGK~i~l~i~~~~~e~a~~~v~~ic~~L 80 (94)
T 1vq3_A 48 VKKLRLGKSIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 661887889999990799799999999999986
No 26
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=20.28 E-value=19 Score=16.19 Aligned_cols=30 Identities=37% Similarity=0.539 Sum_probs=22.9
Q ss_pred EEECCCEEEEEECCC-----CHHHHHHHHHHHHHH
Q ss_conf 983215089997497-----999999999998543
Q gi|254780254|r 96 CRVKPGRILFEIDGV-----SEEVARRAFRLGAAK 125 (138)
Q Consensus 96 ~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~K 125 (138)
-.+++|..|.||+|. +.+.|.++|+.+...
T Consensus 56 G~L~~GD~Il~VNg~~v~~~t~~ea~~~l~~~~~~ 90 (103)
T 2fcf_A 56 GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP 90 (103)
T ss_dssp CCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
T ss_conf 99998999999999998899899999999848995
No 27
>2uzc_A Human pdlim5, PDZ and LIM domain 5; polymorphism, metal-binding, enigma homolog, phosphorylation, signaling protein, zinc, PDZ domain, acetylation; 1.5A {Homo sapiens}
Probab=20.23 E-value=41 Score=14.36 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=23.6
Q ss_pred EEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCC
Q ss_conf 983215089997497-----99999999999854389
Q gi|254780254|r 96 CRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLS 127 (138)
Q Consensus 96 ~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP 127 (138)
+.+++|..|.||+|. +.+.|.+.++.+...+.
T Consensus 43 ~gL~~GD~Il~INg~~v~~~t~~ea~~~l~~~~~~v~ 79 (88)
T 2uzc_A 43 ANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLN 79 (88)
T ss_dssp TTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 6999998999999999999989999999876999799
Done!