HHSEARCH alignment of GI: 254780254 and SCOP domain: d1jj2h_

Alignment
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=1.4e-39  Score=244.26  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=107.1

Q ss_pred             CCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCEEEEEC---------CCCCCC
Q ss_conf             8753121310----3274053132599999999999974267-----846898754986078621---------544001
Q gi|254780254|r   24 GGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKR-----AGRVWICVFPDVPVTAKP---------TEVRMG   85 (138)
Q Consensus        24 ~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk-----~gkiwirv~P~~pvTkKp---------~e~RMG   85 (138)
                      -||...+++|    +|+|+|+++|+++||||||++++|+|++     ++++|||+|||+|+|.+|         +|+|||
T Consensus        33 mGn~~a~~~f~~~~~L~a~e~~qi~~~aiEAaR~~~nr~l~~~~g~~~~~~~irvfP~~~ir~kp~~~~agAdr~~~rMg  112 (167)
T d1jj2h_          33 MGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMR  112 (167)
T ss_dssp             EECTTSCSCCSEEEEEEECSCEEEEHHHHHHHHHHHHTTSTTSCTTCSCEEEECCCCCEEEEECC-----------CCSS
T ss_pred             CCCCCCCCCCCEEEEEEECCCEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf             75752147677589999855435638899999999999999850535776899856873077354001356543002456


Q ss_pred             CCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             4478811069983215089997497999999999998543895179999862
Q gi|254780254|r   86 KGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        86 kGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      +|||++++|||+|++|+||||++++++++|++||++|++|||++|+|+.+..
T Consensus       113 ~gkGkp~~~aArVk~G~ilfei~~~~e~~akeALr~A~~KLP~~~kI~~~p~  164 (167)
T d1jj2h_         113 APFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPA  164 (167)
T ss_dssp             SCCCEEEEEEEEECTTCEEEEEEESSCCCHHHHHHHHTTSSSSCEEEEECSC
T ss_pred             CCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             7778863899997489889999268889999999983577999789997178


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]