Query gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 138 No_of_seqs 112 out of 1127 Neff 5.2 Searched_HMMs 13730 Date Tue May 24 10:05:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780254.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2gyck1 d.41.4.2 (K:3-133) Rib 100.0 0 0 356.1 7.0 131 4-135 1-131 (131) 2 d2j01q1 d.41.4.2 (Q:6-141) Rib 100.0 0 0 346.4 13.7 131 7-137 1-131 (136) 3 d1jj2h_ d.41.4.1 (H:) Ribosoma 100.0 1.4E-39 1E-43 244.3 10.8 114 24-137 33-164 (167) 4 d1vqoh1 d.41.4.1 (H:1-163) Rib 100.0 3.2E-37 2.3E-41 230.8 11.1 100 33-132 47-163 (163) 5 d2pa2a1 d.41.4.1 (A:40-176) Ri 100.0 1.7E-36 1.2E-40 226.7 9.9 102 33-134 11-128 (137) 6 d1cmxa_ d.3.1.6 (A:) Ubiquitin 36.7 12 0.00085 16.1 2.7 21 90-110 158-178 (229) 7 d1xd3a_ d.3.1.6 (A:) Ubiquitin 35.3 12 0.00087 16.0 2.6 21 90-110 165-185 (229) 8 d2f0aa1 b.36.1.1 (A:251-342) S 33.8 14 0.001 15.6 3.1 41 95-135 45-90 (92) 9 d2cssa1 b.36.1.1 (A:8-115) Reg 33.6 14 0.001 15.6 2.7 42 89-130 57-103 (108) 10 d1qava_ b.36.1.1 (A:) Syntroph 29.7 3.9 0.00029 18.8 -0.7 43 89-131 40-87 (90) 11 d2fcfa1 b.36.1.1 (A:1148-1243) 29.1 6 0.00044 17.7 0.2 37 90-126 47-88 (96) 12 d1rgra_ b.36.1.1 (A:) Synaptic 27.6 9.3 0.00068 16.6 1.0 37 90-126 42-83 (93) 13 d2etla1 d.3.1.6 (A:1-223) Ubiq 26.4 19 0.0014 14.8 2.6 22 89-110 157-178 (223) 14 d1v5qa_ b.36.1.1 (A:) Glutamat 25.6 20 0.0015 14.8 3.3 42 91-132 57-103 (122) 15 d1x45a1 b.36.1.1 (A:8-92) Amyl 25.1 12 0.0009 15.9 1.2 43 90-132 37-84 (85) 16 d1ihja_ b.36.1.1 (A:) Inad {Fr 24.4 9.4 0.00068 16.6 0.5 36 90-125 46-86 (94) 17 d1ub0a_ c.72.1.2 (A:) 4-amino- 24.2 7.3 0.00053 17.3 -0.1 10 42-51 133-142 (258) 18 d1ozia_ b.36.1.1 (A:) Phosphat 22.0 24 0.0017 14.3 2.2 29 97-125 55-88 (99) 19 d1gtda_ d.284.1.1 (A:) PurS su 21.4 24 0.0018 14.3 4.3 32 95-126 33-65 (82) 20 d1wf7a_ b.36.1.1 (A:) Enigma h 20.4 20 0.0014 14.8 1.5 31 96-126 45-80 (103) No 1 >d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=356.12 Aligned_cols=131 Identities=56% Similarity=1.002 Sum_probs=128.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCC Q ss_conf 88775510678989723477875312131032740531325999999999999742678468987549860786215440 Q gi|254780254|r 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVR 83 (138) Q Consensus 4 ~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~R 83 (138) |||+|||||+||||++|.+ +++.|+||+|||+|+|+|+||++||||||++|+|+|+++|++|||+|||+|||+||+|+| T Consensus 1 qPkrtK~rK~~kgr~~g~~-~g~~l~~G~yGL~ale~g~it~~qiEa~R~~i~R~lkr~gk~wirifP~~pvTkKp~e~R 79 (131) T d2gyck1 1 QPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVR 79 (131) T ss_dssp CCCCCCSSCCCCCCSCCCC-CSCCSSCCCCCCEEESCEEEEHHHHHHHHHHHHTTCTTCCCEEECCCCCBCCCBCCSSCS T ss_pred CCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEEECCCCEECHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCE T ss_conf 9897764577699986667-685371005235866573466999999999999864107669998538688982434423 Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 0144788110699832150899974979999999999985438951799998 Q gi|254780254|r 84 MGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR 135 (138) Q Consensus 84 MGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k 135 (138) ||+|||++|||||+|+||+||||++|+++++|++||++|++|||++|+||+| T Consensus 80 MGkGKG~~~~wva~Vk~G~ilfEi~gv~e~~a~~al~~aa~KLP~k~k~i~k 131 (131) T d2gyck1 80 MGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTK 131 (131) T ss_dssp SCCCBCCSCCCEEEECTEEECEEECCCSCCSSHHHHHHHTTTSSSCBCCCCC T ss_pred ECCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 0377688726899964897999975899999999999998618986899869 No 2 >d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=346.36 Aligned_cols=131 Identities=50% Similarity=0.853 Sum_probs=129.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCC Q ss_conf 75510678989723477875312131032740531325999999999999742678468987549860786215440014 Q gi|254780254|r 7 NTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGK 86 (138) Q Consensus 7 ~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~RMGk 86 (138) ||||||+||||++|.++++|.|.||+|||+|+|+|+||++||||||++|+|+|+++|++|||||||.|||+||+|+|||+ T Consensus 1 rtKyrK~~kgr~~g~~~~~~~l~fG~yGL~a~~~g~it~~qiEa~R~~i~r~lk~~gk~wiri~P~~pvTkKp~e~RMGk 80 (136) T d2j01q1 1 RMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGK 80 (136) T ss_dssp CCSSCCCCCCCCCSCTTSCCCCCSSSSEEEESSCEEEEHHHHHHHHHHHHHHTSSCCEEEECCCCCEEECCCCSSCCSSS T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCC T ss_conf 99767788999877678877860264100330751885999999999998653558769998548757875025650368 Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC Q ss_conf 478811069983215089997497999999999998543895179999862 Q gi|254780254|r 87 GKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138) Q Consensus 87 GKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138) |||+|||||++|+||+||||++|+++++|++||++|++|||++|+||+|++ T Consensus 81 GKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~a~~KLP~k~k~V~r~~ 131 (136) T d2j01q1 81 GKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDA 131 (136) T ss_dssp CSCCTTEEEEEECTTCEEEEEESSCHHHHHHHHHHHHHHSSSCEEEECCSC T ss_pred CCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 989850479996389599997698999999999999860898579998375 No 3 >d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=100.00 E-value=1.4e-39 Score=244.26 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=107.1 Q ss_pred CCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCEEEEEC---------CCCCCC Q ss_conf 8753121310----3274053132599999999999974267-----846898754986078621---------544001 Q gi|254780254|r 24 GGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKR-----AGRVWICVFPDVPVTAKP---------TEVRMG 85 (138) Q Consensus 24 ~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk-----~gkiwirv~P~~pvTkKp---------~e~RMG 85 (138) -||...+++| +|+|+|+++|+++||||||++++|+|++ ++++|||+|||+|+|.+| +|+||| T Consensus 33 mGn~~a~~~f~~~~~L~a~e~~qi~~~aiEAaR~~~nr~l~~~~g~~~~~~~irvfP~~~ir~kp~~~~agAdr~~~rMg 112 (167) T d1jj2h_ 33 MGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMR 112 (167) T ss_dssp EECTTSCSCCSEEEEEEECSCEEEEHHHHHHHHHHHHTTSTTSCTTCSCEEEECCCCCEEEEECC-----------CCSS T ss_pred CCCCCCCCCCCEEEEEEECCCEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCC T ss_conf 75752147677589999855435638899999999999999850535776899856873077354001356543002456 Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC Q ss_conf 4478811069983215089997497999999999998543895179999862 Q gi|254780254|r 86 KGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138) Q Consensus 86 kGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138) +|||++++|||+|++|+||||++++++++|++||++|++|||++|+|+.+.. T Consensus 113 ~gkGkp~~~aArVk~G~ilfei~~~~e~~akeALr~A~~KLP~~~kI~~~p~ 164 (167) T d1jj2h_ 113 APFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPA 164 (167) T ss_dssp SCCCEEEEEEEEECTTCEEEEEEESSCCCHHHHHHHHTTSSSSCEEEEECSC T ss_pred CCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 7778863899997489889999268889999999983577999789997178 No 4 >d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=100.00 E-value=3.2e-37 Score=230.76 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=93.8 Q ss_pred CCEEECCCEEECHHHHHHHHHHHHHHCCC------CCEEEEEECCCCEEEEECC---------CCCCCCCCCCCCEEEEE Q ss_conf 03274053132599999999999974267------8468987549860786215---------44001447881106998 Q gi|254780254|r 33 FALKAQEANRIGSSEIEAARRAISRGMKR------AGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWVCR 97 (138) Q Consensus 33 yGL~a~e~g~it~~qiEaaR~~i~R~lkk------~gkiwirv~P~~pvTkKp~---------e~RMGkGKG~~~~wv~~ 97 (138) ++|+++|+++|+++||||||++++|+|++ .+++|||||||+|||++|. |+|||+|||++++|||+ T Consensus 47 ~~L~a~e~~~i~~~~iEAaR~a~~r~l~k~~G~~~~~~~~irvfP~~~v~~kp~~~~agadrl~~~Mg~gkG~p~~~aAr 126 (163) T d1vqoh1 47 ISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAAR 126 (163) T ss_dssp EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEE T ss_pred EEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 99987366024389999999999750144327556606999956761055274452013001034556787885389999 Q ss_pred ECCCEEEEEECCCC--HHHHHHHHHHHHHHCCCEEEE Q ss_conf 32150899974979--999999999985438951799 Q gi|254780254|r 98 VKPGRILFEIDGVS--EEVARRAFRLGAAKLSVVTKF 132 (138) Q Consensus 98 Vk~G~ilfEi~gi~--~~~a~~al~~a~~KLP~k~k~ 132 (138) |++|+||||+.+++ .+.|++||++|++|||++|+| T Consensus 127 Vk~G~ilfei~~~~~~~~~akeALr~A~~KLP~~tkI 163 (163) T d1vqoh1 127 VQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163 (163) T ss_dssp ECTTCEEEEEEECSTTHHHHHHHHHHHGGGSSSCEEE T ss_pred ECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEC T ss_conf 8799899999742316899999999873428996079 No 5 >d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=1.7e-36 Score=226.65 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=95.2 Q ss_pred CCEEECCCEEECHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCEEEEECCCCCCC---------CCCCCCCEEEEEE Q ss_conf 032740531325999999999999742-----67846898754986078621544001---------4478811069983 Q gi|254780254|r 33 FALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWICVFPDVPVTAKPTEVRMG---------KGKGNVEKWVCRV 98 (138) Q Consensus 33 yGL~a~e~g~it~~qiEaaR~~i~R~l-----kk~gkiwirv~P~~pvTkKp~e~RMG---------kGKG~~~~wv~~V 98 (138) ..|+++|+++|+++||||||++|+|+| ++++++|||+|||+|+|.||.++||| +|||++++|||+| T Consensus 11 ~~L~~~e~~~i~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~~l~~k~~~~~~Gadr~~~gMrkgkG~p~~waArV 90 (137) T d2pa2a1 11 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV 90 (137) T ss_dssp EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEEEE T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 99998676321688999999999998887526577479999768830660601202565421223446768855899995 Q ss_pred CCCEEEEEECCC--CHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 215089997497--999999999998543895179999 Q gi|254780254|r 99 KPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFIQ 134 (138) Q Consensus 99 k~G~ilfEi~gi--~~~~a~~al~~a~~KLP~k~k~i~ 134 (138) ++|+||||+++. +.+.|++||++|++|||++|+|+- T Consensus 91 k~G~ilfEi~g~~~~~~~Ak~ALr~Aa~KLP~~tkIvv 128 (137) T d2pa2a1 91 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHI 128 (137) T ss_dssp CTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEE T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 38968999850255899999999987312899679999 No 6 >d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence} Probab=36.73 E-value=12 Score=16.09 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.8 Q ss_pred CCCEEEEEECCCEEEEEECCC Q ss_conf 811069983215089997497 Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138) Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138) ...|+||.|+.+--|+|++|. T Consensus 158 ~~~HFIafV~~~G~lyELDG~ 178 (229) T d1cmxa_ 158 TNLHYITYVEENGGIFELDGR 178 (229) T ss_dssp CSEEEEEEEECSSEEEEECTT T ss_pred CCEEEEEEEEECCEEEECCCC T ss_conf 670589999779989983799 No 7 >d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.25 E-value=12 Score=16.02 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.9 Q ss_pred CCCEEEEEECCCEEEEEECCC Q ss_conf 811069983215089997497 Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138) Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138) .-.|+||.|..+--|+|++|. T Consensus 165 ~~~HFI~fV~~~G~lyELDG~ 185 (229) T d1xd3a_ 165 VDLHFIALVHVDGHLYELDGR 185 (229) T ss_dssp CCEEEEEEEEETTEEEEECTT T ss_pred CCEEEEEEEEECCEEEECCCC T ss_conf 451389988539999985699 No 8 >d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=33.83 E-value=14 Score=15.59 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=28.4 Q ss_pred EEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 9983215089997497-----9999999999985438951799998 Q gi|254780254|r 95 VCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQR 135 (138) Q Consensus 95 v~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~k 135 (138) .-++++|..|++++|. +.+.|.+.|+.+..+-+.-+-.|.| T Consensus 45 ~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R 90 (92) T d2f0aa1 45 DGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAK 90 (92) T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEEC T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 3997783199989999988998999999998656789709999995 No 9 >d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Probab=33.60 E-value=14 Score=15.63 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.1 Q ss_pred CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEE Q ss_conf 8811069983215089997497-----99999999999854389517 Q gi|254780254|r 89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVT 130 (138) Q Consensus 89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~ 130 (138) |++.+-.-.+++|..|.|++|. +.+.|.+.|+.+.....+.. T Consensus 57 gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l 103 (108) T d2cssa1 57 GSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI 103 (108) T ss_dssp TSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE T ss_pred CCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEE T ss_conf 98256348877589999999999889989999999985899988999 No 10 >d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Probab=29.66 E-value=3.9 Score=18.80 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=28.4 Q ss_pred CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEE Q ss_conf 8811069983215089997497-----999999999998543895179 Q gi|254780254|r 89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTK 131 (138) Q Consensus 89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k 131 (138) |++.+.+-.+.+|..|.+|+|. +.+.|.++|+.+...+-+..+ T Consensus 40 ~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 87 (90) T d1qava_ 40 GLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 87 (90) T ss_dssp TSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEE T ss_pred CCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEEEEEE T ss_conf 982120798883489999999999999799999999819993999999 No 11 >d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Probab=29.08 E-value=6 Score=17.73 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=25.8 Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHC Q ss_conf 811069983215089997497-----9999999999985438 Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKL 126 (138) Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KL 126 (138) ++.+-+-.+++|..|.|++|. +.+.|.++|+.+...+ T Consensus 47 s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v 88 (96) T d2fcfa1 47 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPV 88 (96) T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSE T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE T ss_conf 979974999689999999998988998999999998389919 No 12 >d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=27.60 E-value=9.3 Score=16.65 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=25.2 Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHC Q ss_conf 811069983215089997497-----9999999999985438 Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKL 126 (138) Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KL 126 (138) ++.+-+-.+++|..|.|++|. +.+.|.++|+.+...+ T Consensus 42 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v 83 (93) T d1rgra_ 42 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIV 83 (93) T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEE T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE T ss_conf 858950998857578999999988998999999998399979 No 13 >d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]} Probab=26.43 E-value=19 Score=14.84 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.5 Q ss_pred CCCCEEEEEECCCEEEEEECCC Q ss_conf 8811069983215089997497 Q gi|254780254|r 89 GNVEKWVCRVKPGRILFEIDGV 110 (138) Q Consensus 89 G~~~~wv~~Vk~G~ilfEi~gi 110 (138) ....|+||.|..+--|+|++|. T Consensus 157 ~~~~HFI~fV~~~G~lyELDG~ 178 (223) T d2etla1 157 KVNFHFILFNNVDGHLYELDGR 178 (223) T ss_dssp CCCEEEEEEEEETTEEEEECTT T ss_pred CCCEEEEEEEEECCEEEEECCC T ss_conf 7545899999769979990378 No 14 >d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=25.60 E-value=20 Score=14.75 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=29.7 Q ss_pred CCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE Q ss_conf 11069983215089997497-----9999999999985438951799 Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF 132 (138) Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~ 132 (138) +....-.+.+|..|.||+|. +.+.|.++|+.+.....+..+. T Consensus 57 ~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~ 103 (122) T d1v5qa_ 57 PAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122) T ss_dssp HHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE T ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEE T ss_conf 89982899757798889999189998999999998189941899999 No 15 >d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Probab=25.10 E-value=12 Score=15.95 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=28.1 Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE Q ss_conf 811069983215089997497-----9999999999985438951799 Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF 132 (138) Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~ 132 (138) ++.+-.-.+++|..|.|++|. +.+.|.++|+.+.....+...+ T Consensus 37 g~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V 84 (85) T d1x45a1 37 GPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI 84 (85) T ss_dssp CHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE T ss_conf 989983999867998989999988998999999997599999799998 No 16 >d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=24.40 E-value=9.4 Score=16.63 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=24.6 Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHH Q ss_conf 811069983215089997497-----999999999998543 Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAK 125 (138) Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~K 125 (138) ++.+-.-.+++|..|.+++|. +.+.|.+.|+.+..+ T Consensus 46 s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~ 86 (94) T d1ihja_ 46 SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK 86 (94) T ss_dssp SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE T ss_pred CHHHHHCCCCHHCEEEEECCEECCCCCHHHHHHHHHCCCCE T ss_conf 98998399980119998999997899899999999859997 No 17 >d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]} Probab=24.22 E-value=7.3 Score=17.27 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9 Q ss_pred EECHHHHHHH Q ss_conf 3259999999 Q gi|254780254|r 42 RIGSSEIEAA 51 (138) Q Consensus 42 ~it~~qiEaa 51 (138) -||.|+.|++ T Consensus 133 iiTPN~~Ea~ 142 (258) T d1ub0a_ 133 LVTPNRLEAE 142 (258) T ss_dssp EECCBHHHHH T ss_pred EECCCHHHHH T ss_conf 2058788886 No 18 >d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Probab=21.99 E-value=24 Score=14.34 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=22.6 Q ss_pred EECCCEEEEEECCC-----CHHHHHHHHHHHHHH Q ss_conf 83215089997497-----999999999998543 Q gi|254780254|r 97 RVKPGRILFEIDGV-----SEEVARRAFRLGAAK 125 (138) Q Consensus 97 ~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~K 125 (138) .+++|..|.|++|. +.+.|.++|+.+... T Consensus 55 ~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~ 88 (99) T d1ozia_ 55 RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV 88 (99) T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE T ss_conf 9975589988999986899899999998779986 No 19 >d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=21.42 E-value=24 Score=14.27 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=28.0 Q ss_pred EEEECCCEEE-EEECCCCHHHHHHHHHHHHHHC Q ss_conf 9983215089-9974979999999999985438 Q gi|254780254|r 95 VCRVKPGRIL-FEIDGVSEEVARRAFRLGAAKL 126 (138) Q Consensus 95 v~~Vk~G~il-fEi~gi~~~~a~~al~~a~~KL 126 (138) +.-|+.|+.+ |+++.-+.+.|.+.....+.+| T Consensus 33 v~~Vr~gK~~~l~i~~~~~e~a~~~v~~~c~~l 65 (82) T d1gtda_ 33 VEDTDTTDVITFTMDEDSLEAVEREVEDMCQRL 65 (82) T ss_dssp CEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHT T ss_pred CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 413798789999972799899999999999987 No 20 >d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Probab=20.44 E-value=20 Score=14.80 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.5 Q ss_pred EEECCCEEEEEECCC-----CHHHHHHHHHHHHHHC Q ss_conf 983215089997497-----9999999999985438 Q gi|254780254|r 96 CRVKPGRILFEIDGV-----SEEVARRAFRLGAAKL 126 (138) Q Consensus 96 ~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KL 126 (138) +.+++|..|++|+|. +.+.|.+.|+.+...+ T Consensus 45 ~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v 80 (103) T d1wf7a_ 45 AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSL 80 (103) T ss_dssp TTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEE T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE T ss_conf 888778899989999889998999999997599869 Done!