RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16
[Candidatus Liberibacter asiaticus str. psy62]
         (138 letters)



>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
           [TaxId: 562]}
          Length = 131

 Score =  154 bits (392), Expect = 2e-39
 Identities = 73/132 (55%), Positives = 100/132 (75%), Gaps = 1/132 (0%)

Query: 4   QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAG 63
           QPK TK+ K  KGR +G+A+G + + FG+F LKA    R+ + +IEAARRA++R +KR G
Sbjct: 1   QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQG 59

Query: 64  RVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGA 123
           ++WI VFPD P+T KP  VRMGKGKGNVE WV  ++PG++L+E+DGV EE+AR AF+L A
Sbjct: 60  KIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAA 119

Query: 124 AKLSVVTKFIQR 135
           AKL + T F+ +
Sbjct: 120 AKLPIKTTFVTK 131


>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
           thermophilus [TaxId: 274]}
          Length = 136

 Score =  152 bits (385), Expect = 1e-38
 Identities = 66/128 (51%), Positives = 88/128 (68%)

Query: 8   TKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWI 67
            KY KQ +GR+KG  KGG  + FG++ L A E   I + +IEAAR A+ R  +R G+++I
Sbjct: 2   MKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFI 61

Query: 68  CVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLS 127
            +FPD P T KP EVRMGKGKGNVE +V  VKPGR++FE+ GV+EE A  A R+   KL 
Sbjct: 62  RIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLP 121

Query: 128 VVTKFIQR 135
           + TK ++R
Sbjct: 122 IKTKIVRR 129


>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 167

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 27/160 (16%)

Query: 1   MLRQPKNTKYPKQFKGRIKGVA-------KGGSRICFGNFAL----KAQEANRIGSSEIE 49
           M R      Y +  +  I G+          G+      +        ++  +I  + +E
Sbjct: 5   MYRNSSKPAYTR--REYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALE 62

Query: 50  AARRAISRGMKRA-----GRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWV 95
           AAR A +R ++ +      +  I  FP   +                 M    G      
Sbjct: 63  AARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTA 122

Query: 96  CRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR 135
            RV     +F      +     A+R    K++        
Sbjct: 123 ARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSS 162


>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 163

 Score = 91.8 bits (228), Expect = 2e-20
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 31/160 (19%)

Query: 1   MLRQPKNTKYPKQFKGRIKGV--------AKGGSRICFGNF----ALKAQEANRIGSSEI 48
           M R      Y +  +  I G+          G  +    ++    +L  +E  ++    +
Sbjct: 5   MYRDIDKPAYTR--REYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSL 62

Query: 49  EAARRAISR------GMKRAGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEK 93
           EA+R + +R      G +   ++ +  FP   +                 M    G +  
Sbjct: 63  EASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVG 122

Query: 94  WVCRVKPGRILFEIDGVSE--EVARRAFRLGAAKLSVVTK 131
              RV+ G  LF      E  E  + AFR    K++   +
Sbjct: 123 TAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCR 162


>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 89.5 bits (222), Expect = 9e-20
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 35  LKAQEANRIGSSEIEAARRAISRGMK-----RAGRVWICVFPDVPVTAKPTEVRMG---- 85
           + + E  ++ S  +EAAR   ++ M          + + + P   +         G    
Sbjct: 13  MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 72

Query: 86  -----KGKGNVEKWVCRVKPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFI 133
                   G  +  V RV  G+++  I     ++E    A R    K     K  
Sbjct: 73  QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIH 127


>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1
          {Campylobacter jejuni [TaxId: 197]}
          Length = 188

 Score = 25.5 bits (55), Expect = 1.8
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 36 KAQEANRIGSSEIEAARRAISRGMKRAGRVWIC 68
          K  +A+ I   +I      +   +K+ G++ IC
Sbjct: 16 KIVQASEILKGQIAKVGELLCECLKKGGKILIC 48


>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Vibrio harveyi [TaxId: 669]}
          Length = 504

 Score = 25.1 bits (53), Expect = 2.6
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 45  SSEIEAARRAISRGMKRAGRVWI 67
             +     + I R  + AGR+  
Sbjct: 409 EEDYPQVSQLIPRLEEIAGRLVF 431


>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
           [TaxId: 44689]}
          Length = 306

 Score = 24.4 bits (52), Expect = 3.8
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 72  DVPVTAKPTEVRMGKGKG-----NVEKWVCRV-KPGRILFEIDGVSEEVARRAFRLGAAK 125
              VT +P  +++            ++W   + KP  + ++   + EE+ R   R+    
Sbjct: 54  SGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKN 113

Query: 126 LSVVTKFIQRVVE 138
             +  + I   + 
Sbjct: 114 KGISAQPINLKIY 126


>d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription
           factor FadR, C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 24.2 bits (51), Expect = 4.1
 Identities = 3/26 (11%), Positives = 7/26 (26%)

Query: 41  NRIGSSEIEAARRAISRGMKRAGRVW 66
                   +     + R    +G +W
Sbjct: 120 ALCSEGAHDQVYETVRRYGHESGEIW 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,827
Number of extensions: 23621
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 16
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)