RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62] (138 letters) >d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Length = 131 Score = 154 bits (392), Expect = 2e-39 Identities = 73/132 (55%), Positives = 100/132 (75%), Gaps = 1/132 (0%) Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAG 63 QPK TK+ K KGR +G+A+G + + FG+F LKA R+ + +IEAARRA++R +KR G Sbjct: 1 QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQG 59 Query: 64 RVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGA 123 ++WI VFPD P+T KP VRMGKGKGNVE WV ++PG++L+E+DGV EE+AR AF+L A Sbjct: 60 KIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAA 119 Query: 124 AKLSVVTKFIQR 135 AKL + T F+ + Sbjct: 120 AKLPIKTTFVTK 131 >d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Length = 136 Score = 152 bits (385), Expect = 1e-38 Identities = 66/128 (51%), Positives = 88/128 (68%) Query: 8 TKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWI 67 KY KQ +GR+KG KGG + FG++ L A E I + +IEAAR A+ R +R G+++I Sbjct: 2 MKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFI 61 Query: 68 CVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLS 127 +FPD P T KP EVRMGKGKGNVE +V VKPGR++FE+ GV+EE A A R+ KL Sbjct: 62 RIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLP 121 Query: 128 VVTKFIQR 135 + TK ++R Sbjct: 122 IKTKIVRR 129 >d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Score = 95.3 bits (237), Expect = 2e-21 Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 27/160 (16%) Query: 1 MLRQPKNTKYPKQFKGRIKGVA-------KGGSRICFGNFAL----KAQEANRIGSSEIE 49 M R Y + + I G+ G+ + ++ +I + +E Sbjct: 5 MYRNSSKPAYTR--REYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALE 62 Query: 50 AARRAISRGMKRA-----GRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWV 95 AAR A +R ++ + + I FP + M G Sbjct: 63 AARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTA 122 Query: 96 CRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR 135 RV +F + A+R K++ Sbjct: 123 ARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSS 162 >d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Score = 91.8 bits (228), Expect = 2e-20 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 31/160 (19%) Query: 1 MLRQPKNTKYPKQFKGRIKGV--------AKGGSRICFGNF----ALKAQEANRIGSSEI 48 M R Y + + I G+ G + ++ +L +E ++ + Sbjct: 5 MYRDIDKPAYTR--REYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSL 62 Query: 49 EAARRAISR------GMKRAGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEK 93 EA+R + +R G + ++ + FP + M G + Sbjct: 63 EASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVG 122 Query: 94 WVCRVKPGRILFEIDGVSE--EVARRAFRLGAAKLSVVTK 131 RV+ G LF E E + AFR K++ + Sbjct: 123 TAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCR 162 >d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Score = 89.5 bits (222), Expect = 9e-20 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 16/115 (13%) Query: 35 LKAQEANRIGSSEIEAARRAISRGMK-----RAGRVWICVFPDVPVTAKPTEVRMG---- 85 + + E ++ S +EAAR ++ M + + + P + G Sbjct: 13 MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 72 Query: 86 -----KGKGNVEKWVCRVKPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFI 133 G + V RV G+++ I ++E A R K K Sbjct: 73 QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIH 127 >d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Length = 188 Score = 25.5 bits (55), Expect = 1.8 Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 36 KAQEANRIGSSEIEAARRAISRGMKRAGRVWIC 68 K +A+ I +I + +K+ G++ IC Sbjct: 16 KIVQASEILKGQIAKVGELLCECLKKGGKILIC 48 >d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]} Length = 504 Score = 25.1 bits (53), Expect = 2.6 Identities = 5/23 (21%), Positives = 9/23 (39%) Query: 45 SSEIEAARRAISRGMKRAGRVWI 67 + + I R + AGR+ Sbjct: 409 EEDYPQVSQLIPRLEEIAGRLVF 431 >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 Score = 24.4 bits (52), Expect = 3.8 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 72 DVPVTAKPTEVRMGKGKG-----NVEKWVCRV-KPGRILFEIDGVSEEVARRAFRLGAAK 125 VT +P +++ ++W + KP + ++ + EE+ R R+ Sbjct: 54 SGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKN 113 Query: 126 LSVVTKFIQRVVE 138 + + I + Sbjct: 114 KGISAQPINLKIY 126 >d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription factor FadR, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 152 Score = 24.2 bits (51), Expect = 4.1 Identities = 3/26 (11%), Positives = 7/26 (26%) Query: 41 NRIGSSEIEAARRAISRGMKRAGRVW 66 + + R +G +W Sbjct: 120 ALCSEGAHDQVYETVRRYGHESGEIW 145 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.137 0.409 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 521,827 Number of extensions: 23621 Number of successful extensions: 108 Number of sequences better than 10.0: 1 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 16 Length of query: 138 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 62 Effective length of database: 1,364,116 Effective search space: 84575192 Effective search space used: 84575192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (22.5 bits)