BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16
[Candidatus Liberibacter asiaticus str. psy62]
         (138 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 138

 Score =  275 bits (702), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
           MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK
Sbjct: 1   MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60

Query: 61  RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
           RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR
Sbjct: 61  RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120

Query: 121 LGAAKLSVVTKFIQRVVE 138
           LGAAKLSVVTKFIQRVVE
Sbjct: 121 LGAAKLSVVTKFIQRVVE 138


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 25.4 bits (54), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 30  FGNFALKAQEANRIGSSEIEAARRAISRGMKRA 62
           F N A + +E    GS+ IE+   AIS+ M ++
Sbjct: 744 FSNNAKRMEELLHSGSANIESELSAISKAMNKS 776


>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 24.3 bits (51), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 9   KYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWIC 68
           +YP +   ++  V     R CF    + +Q+   + S + EAA   I    +   ++W  
Sbjct: 92  RYPDRILLKLLHVCPVYCRFCFRREMVGSQKGTVLSSKDTEAALAYI----QEKSQIWEV 147

Query: 69  VF 70
           +F
Sbjct: 148 IF 149


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score = 22.7 bits (47), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 103 ILFEIDGVSEEVARRAFRLGAAKLSV 128
           I++  D  S+EV +RA   G   LSV
Sbjct: 245 IIYADDAYSKEVMKRAHNAGCRVLSV 270


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 22.3 bits (46), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 45  SSEIEAARRAISRGMKRAGRVWICVFPDV 73
           S E+    R+ +  M R GR  +C+  DV
Sbjct: 275 SGELSQQERSNALQMMRDGRARVCIATDV 303


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,311
Number of Sequences: 1233
Number of extensions: 2734
Number of successful extensions: 10
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 138
length of database: 328,796
effective HSP length: 66
effective length of query: 72
effective length of database: 247,418
effective search space: 17814096
effective search space used: 17814096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)