HHsearch alignment for GI: 254780255 and conserved domain: PRK00310

>PRK00310 rpsC 30S ribosomal protein S3; Reviewed.
Probab=100.00  E-value=0  Score=577.45  Aligned_cols=213  Identities=57%  Similarity=0.952  Sum_probs=207.9

Q ss_pred             CCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             98645785266503206215670273125799998999999999877422642215532588518999973741001356
Q gi|254780255|r    1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKK   80 (227)
Q Consensus         1 MGQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkk   80 (227)
T Consensus         1 MGQKvnP~GfRLGi~k~w~S~Wfa~~k~Y~~~L~eD~kIR~yi~k~~~~agIs~I~IeR~~~~i~V~I~tarPgiiIGkk   80 (233)
T PRK00310          1 MGQKVNPIGFRLGITKDWDSRWYADKKDYADLLHEDLKIRKFLKKKLKKAGVSRIVIERPAKKVRVTIHTARPGIVIGKK   80 (233)
T ss_pred             CCCCCCCCCEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEEEECCCEEEEEEEECCCCCHHCCC
T ss_conf             98988983353145679977187882454799999999999997501015724899997388799999967886312156


Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             53489989876403587057879981375533778799999998759636899999999853238855999970367864
Q gi|254780255|r   81 GTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGA  160 (227)
Q Consensus        81 g~~i~~l~~~L~~~~~~~v~i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~  160 (227)
T Consensus        81 G~~Ie~L~~~L~k~~~~~v~InI~EVk~Pe~~A~lvA~~IA~qLE~Rv~FRra~K~ai~~~~k~gakGIKI~isGRL~Ga  160 (233)
T PRK00310         81 GEDIEKLRKELQKLTGKPVQINIVEVKKPELDAQLVAESIAQQLERRVSFRRAMKRAIQRAMRAGAKGIKIQVSGRLGGA  160 (233)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             63689999999997489538999996054403050399999858603289999999999999759984699982475773


Q ss_pred             CCCEEEEEEECCCCCCCEEEECEEEEEEEEECCCEEEEEEEEEECCCCCCCCC
Q ss_conf             22215787525532452000030568999953826679999732885377211
Q gi|254780255|r  161 ELSRTECYLEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS  213 (227)
Q Consensus       161 e~Ar~e~~~~G~vpl~t~~a~idy~~~~a~T~~G~~GvKVwi~~~~~~~~~~~  213 (227)
T Consensus       161 EiAR~E~~~eGrvPL~Tlra~IDY~~~~A~T~yGiiGVKVWi~~ge~~~~~~~  213 (233)
T PRK00310        161 EIARTEWYREGRVPLHTLRADIDYATAEAHTTYGVIGVKVWIFKGEVLGGPRA  213 (233)
T ss_pred             CHHHEEEEEECEEECHHEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCC
T ss_conf             01005658723463230143363899899868621799999987750698641