HHsearch alignment of GI: 254780255 and MMDB domain: 2zkq_c_1-94
>2zkq_c (c:1-94) 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_C
Probab=99.89 E-value=9.5e-25 Score=162.54 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=87.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 56702731257999989999999998774226422155325885189999737410013565348998987640358705
Q gi|254780255|r 20 SRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEI 99 (227)
Q Consensus 20 S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~~v 99 (227)
|.|||++++|+++++||.+||+||.++|.++|||+|+|+|+++.+.|+||+++||++||++|.++++|++.|++.+
T Consensus 2 S~W~a~~k~y~~~~~eD~~IR~~i~k~l~~agis~I~I~R~~~~i~I~I~tarPg~iIG~~g~~i~~l~~~L~kev---- 77 (94)
T 2zkq_c 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRF---- 77 (94)
T ss_dssp CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHS----
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH----
T ss_conf 4267666699980019999999999988767705499998789389999948986140655278999999999984----
Q ss_pred EEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 78799813755337787999999
Q gi|254780255|r 100 HLSVNEVPKPEINATLIAQSIAQ 122 (227)
Q Consensus 100 ~i~v~ei~~p~~~A~~iA~~Ia~ 122 (227)
++|+++|+++|++||+
T Consensus 78 -------~~p~~~a~lvA~~IA~ 93 (94)
T 2zkq_c 78 -------GFPEGSVELYAEKVAT 93 (94)
T ss_dssp -------CTTTCCCCCEEEECSC
T ss_pred -------CCCCCEEEEEEEECCC
T ss_conf -------6678627999998168