HHsearch alignment of GI: 254780255 and MMDB domain: 3i1m_C_1-109
>3i1m_C (C:1-109) 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 2qal_C* 1p6g_C 1p87_C 2aw7_C 2avy_C 2i2u_C 2i2p_C* 2qan_C* 2qb9_C* 2qbb_C* 2qbd_C ...
Probab=100.00 E-value=3.4e-40 Score=251.78 Aligned_cols=109 Identities=44% Similarity=0.821 Sum_probs=108.4
Q ss_pred CCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 98645785266503206215670273125799998999999999877422642215532588518999973741001356
Q gi|254780255|r 1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKK 80 (227)
Q Consensus 1 MGQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkk 80 (227)
|||||||+|||||++++|+|.|||++++|+++|+||++||+||.+++..|||++|+|+|+++.+.|+||+++|+++||++
T Consensus 1 MGQKvnP~gfRlgi~~~~~s~W~a~~k~y~~~l~eD~~IR~~i~k~~~~agis~IeI~R~~~~i~I~I~~~rPg~iIG~~ 80 (109)
T 3i1m_C 1 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKK 80 (109)
T ss_dssp -CCCCCTTTTTTTSSCCCSBCCCCCHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCST
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCHHCCCC
T ss_conf 97988980521232579840787895414799999999999999986551221045402665369999962441211530
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 53489989876403587057879981375
Q gi|254780255|r 81 GTDIEKIRKKLSNMTNSEIHLSVNEVPKP 109 (227)
Q Consensus 81 g~~i~~l~~~L~~~~~~~v~i~v~ei~~p 109 (227)
|.++++|++.|+++++++++|+|.||++|
T Consensus 81 g~~i~~l~~~l~k~~~~~~~i~v~evk~P 109 (109)
T 3i1m_C 81 GEDVEKLRKVVADIAGVPAQINIAEVRKP 109 (109)
T ss_dssp THHHHHHHHHHHHHHTSCBCCEEEECSSG
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 57799999887764276326999972383