HHsearch results for GI: 254780255 and protein with PDBid: 3ofo_C

>3ofo_C 30S ribosomal protein S3; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 3fih_C* 2wwl_C 3ofp_C
Probab=100.00  E-value=0  Score=509.87  Aligned_cols=206  Identities=53%  Similarity=0.879  Sum_probs=204.1

Q ss_pred             CCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             86457852665032062156702731257999989999999998774226422155325885189999737410013565
Q gi|254780255|r    2 GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKG   81 (227)
Q Consensus         2 GQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg   81 (227)
                      ||||||+|||||++++|+|.|||++++|+++|+||++||+||++++.++|+++++|+|+++.+.|+||+++|+.++|++|
T Consensus         1 GQKvnP~gfRlgi~k~w~S~Wfa~~k~Y~~~l~eD~~IR~~i~k~l~~agis~i~I~rt~~~~~I~I~~~~p~~iig~~g   80 (206)
T 3ofo_C            1 GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKG   80 (206)
T ss_dssp             CCCCCTTTTTTTSSCCCSBCCCCCHHHHHHHHHHHTTTHHHHHHHTTTTTEEEEEBCCCSSCBCCEEEESSHHHHHCGGG
T ss_pred             CCCCCCCCEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCHHHCCCH
T ss_conf             99879814300104798657878834347998999999999998877614431479965883799999547611113641


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             34899898764035870578799813755337787999999987596368999999998532388559999703678642
Q gi|254780255|r   82 TDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAE  161 (227)
Q Consensus        82 ~~i~~l~~~L~~~~~~~v~i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e  161 (227)
                      .++++|++.|++.++.++++++.++++|+++|.++|++||++||+|++|||+++++++++|++||+||||+|||||+|+|
T Consensus        81 ~~i~~l~~~l~~~~~~~~~i~v~ev~~p~l~A~~iA~~Ia~~Lekr~~fRr~~~~~~~~~~~~gakG~kI~isGrl~G~e  160 (206)
T 3ofo_C           81 EDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAE  160 (206)
T ss_dssp             HHHHHHHHHHHHHHTSCBCCBCCCCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSCSEEEEEEESSTTSCS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf             67999999999850983479999943810558999999999997361289999999999998599668999813436554


Q ss_pred             CCEEEEEEECCCCCCCEEEECEEEEEEEEECCCEEEEEEEEEECCC
Q ss_conf             2215787525532452000030568999953826679999732885
Q gi|254780255|r  162 LSRTECYLEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDE  207 (227)
Q Consensus       162 ~Ar~e~~~~G~vpl~t~~a~idy~~~~a~T~~G~~GvKVwi~~~~~  207 (227)
                      |||+|||++|+|||||++|+|||++++|+|+||+||||||||++|+
T Consensus       161 ~Ar~e~~~~G~v~l~t~~~~idy~~~~a~t~~G~~GvkVwI~~~e~  206 (206)
T 3ofo_C          161 IARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI  206 (206)
T ss_dssp             SCCCCEEECSCCCTTCSSSEECCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCEEEEEECEEECCCCCCCEEEEEEEEECCCEEEEEEEEEECCCC
T ss_conf             5414999726526687343217999999848712899999978999