HHSEARCH alignment of GI: 254780255 and SCOP domain: d1wh9a_

Alignment

Probab=99.64  E-value=1.8e-16  Score=112.47  Aligned_cols=79  Identities=18%  Similarity=0.345  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC---CEEEEEEEEECCCCCC
Q ss_conf             9999999998774226422155325885189999737410013565348998987640358---7057879981375533
Q gi|254780255|r   36 DLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN---SEIHLSVNEVPKPEIN  112 (227)
Q Consensus        36 D~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~---~~v~i~v~ei~~p~~~  112 (227)
                      +-+||+||.+.|.+|||++|+|+|+++.+.|+||+++||++||++|.++++|+..|++.++   .+++|++.+|.+-.|+
T Consensus         9 ~a~Ire~l~k~l~~Agis~ieI~Rt~~~i~I~I~tarPGivIGrkG~~I~~L~~~l~k~~~~~~~~i~lnae~Ia~r~l~   88 (92)
T d1wh9a_           9 KAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGSG   88 (92)
T ss_dssp             HHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
T ss_conf             99999999998876873559999879908999996898605222754399999999999789997289998700026888


Q ss_pred             HH
Q ss_conf             77
Q gi|254780255|r  113 AT  114 (227)
Q Consensus       113 A~  114 (227)
                      |.
T Consensus        89 ~~   90 (92)
T d1wh9a_          89 PS   90 (92)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             55

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: Ribosomal protein S3 N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]