HHSEARCH alignment of GI: 254780255 and SCOP domain: d2uubc2

Alignment
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3e-40  Score=249.87  Aligned_cols=101  Identities=54%  Similarity=0.846  Sum_probs=99.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECEEEE
Q ss_conf             37553377879999999875963689999999985323885599997036786422215787525532452000030568
Q gi|254780255|r  107 PKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGT  186 (227)
Q Consensus       107 ~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl~t~~a~idy~~  186 (227)
                      ++|++||+++|++||+|||+|++|||+++++++++|++||+|++|+|||||+|++|||+|++.+|.+||||++++|||++
T Consensus         1 ~nP~l~A~~vA~~Ia~~Ler~~~fRra~~~~l~~~m~~ga~GikI~isGrl~g~~~ar~~~~~~G~~~~~t~~~~Idy~~   80 (101)
T d2uubc2           1 QNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGF   80 (101)
T ss_dssp             SSTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEEEEEEESGGGCSSCEEEEEEEECCCTTCTTSCEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEECCEEEEE
T ss_conf             99765799999999999974435899999999976563952799999236677643269999961303855103256899


Q ss_pred             EEEEECCCEEEEEEEEEECCC
Q ss_conf             999953826679999732885
Q gi|254780255|r  187 AVAETAYGSCGIKVYVSLRDE  207 (227)
Q Consensus       187 ~~a~T~~G~~GvKVwi~~~~~  207 (227)
                      ++|.|+||+|||||||+.+|+
T Consensus        81 ~~a~tk~GviGVKVwI~~~ev  101 (101)
T d2uubc2          81 ALARTTYGVLGVKAYIFLGEV  101 (101)
T ss_dssp             EEEECSSCEEEEEEEEECCCC
T ss_pred             EEEECCCCCEEEEEEEECCCC
T ss_conf             999908834899999987989


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S3 C-terminal domain
superfamily: Ribosomal protein S3 C-terminal domain
family: Ribosomal protein S3 C-terminal domain
domain: Ribosomal protein S3 C-terminal domain
species: Thermus thermophilus [TaxId: 274]