HHsearch alignment of GI: 254780256 and MMDB domain: 1vq8_R_

>1vq8_R (R:) 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00  E-value=1.6e-36  Score=235.67  Aligned_cols=121  Identities=21%  Similarity=0.174  Sum_probs=113.9

Q ss_pred             HHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------------------------------HCCCH
Q ss_conf             767421011231121487508899999999847986999998886------------------------------58202
Q gi|254780256|r    7 VSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE------------------------------FSRKR   56 (131)
Q Consensus         7 ~~~~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~------------------------------f~~kk   56 (131)
                      .+.....+++++|..+++++||+|+++||++||||++++|+.||+                              |+|++
T Consensus         5 ~~~~~~~~~~~ka~~~~~~~S~kK~~~va~~Irg~~v~~A~~~L~~v~~kk~~vp~~r~~~~~~~~~~~~~~~~~~~p~k   84 (155)
T 1vq8_R            5 YSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEK   84 (155)
T ss_dssp             CSSCCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHH
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             44679998358998478757679999999997798999999999998752322322100455354324357776768488


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC
Q ss_conf             479999999999999984059982336999999889811420102566663720178500899998517233
Q gi|254780256|r   57 IAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG  128 (131)
Q Consensus        57 ~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~  128 (131)
                      +|..|.++|.||.+||+++ |+|+|+|||++||||+|+++||++||||||++++++|+|||+|+|+|.++++
T Consensus        85 aa~~i~k~L~sa~~nA~~~-g~d~~~L~I~~~~v~kG~~~kr~~~rArGR~~~~~~~~~hi~vvL~E~~~~~  155 (155)
T 1vq8_R           85 ASKAFLDLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVED  155 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC----
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf             9999999999999877613-8874462889999778840235561556787860289710899996167779