Query gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 131
No_of_seqs 114 out of 1450
Neff 5.6
Searched_HMMs 33803
Date Tue May 24 06:16:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780256.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2ftc_M Mitochondrial ribosoma 100.0 2.3E-39 6.9E-44 252.4 11.9 107 21-127 3-110 (110)
2 >2zjr_P 50S ribosomal protein 100.0 8E-39 2.4E-43 249.2 10.4 113 15-127 1-113 (113)
3 >3i1n_S 50S ribosomal protein 100.0 1.6E-38 4.7E-43 247.4 8.8 110 15-124 1-110 (110)
4 >1i4j_A 50S ribosomal protein 100.0 7.4E-37 2.2E-41 237.6 11.9 110 15-127 1-110 (110)
5 >2zkr_r 60S ribosomal protein 100.0 5.6E-36 1.6E-40 232.4 13.1 116 11-127 9-156 (184)
6 >1vq8_R 50S ribosomal protein 100.0 1.6E-36 4.7E-41 235.7 9.6 121 7-128 5-155 (155)
7 >3bbo_U Ribosomal protein L22; 100.0 3.3E-38 9.8E-43 245.6 0.7 117 12-128 27-143 (199)
8 >2wwb_I 60S ribosomal protein 100.0 1.7E-35 4.9E-40 229.6 10.1 118 10-128 8-157 (184)
9 >1q48_A ISCU, NIFU-like protei 79.0 4.8 0.00014 20.5 6.0 68 16-83 55-132 (134)
10 >1wfz_A Nitrogen fixation clus 71.2 5.5 0.00016 20.1 3.9 63 17-79 52-124 (130)
11 >2z7e_A ISCU protein, NIFU-lik 65.0 6.2 0.00018 19.8 3.1 63 16-78 55-128 (157)
12 >1su0_B NIFU like protein ISCU 60.1 12 0.00036 18.1 3.8 67 17-83 58-153 (159)
13 >1xjs_A NIFU-like protein; SR1 29.5 40 0.0012 15.0 2.8 57 17-73 59-144 (147)
14 >1nex_A Centromere DNA-binding 28.1 36 0.0011 15.3 2.1 20 31-50 69-88 (91)
15 >2i88_A Colicin-E1; protein-me 26.4 46 0.0014 14.7 3.2 48 28-75 37-87 (191)
16 >3k2t_A LMO2511 protein; liste 26.4 32 0.00096 15.6 1.6 18 37-54 9-26 (57)
17 >1fs1_B SKP1, cyclin A/CDK2-as 24.8 45 0.0013 14.7 2.1 20 31-50 70-89 (97)
18 >3ka5_A Ribosome-associated pr 21.5 44 0.0013 14.8 1.5 17 38-54 10-26 (65)
No 1
>>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_M (M:)
Probab=100.00 E-value=2.3e-39 Score=252.37 Aligned_cols=107 Identities=27% Similarity=0.421 Sum_probs=103.7
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC-HHHEEEEEEEECCCCEEEEE
Q ss_conf 14875088999999998479869999988865820247999999999999998405998-23369999998898114201
Q gi|254780256|r 21 ASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLD-VDRLIVSEAYVGKSVFMKRF 99 (131)
Q Consensus 21 ~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld-~~~L~I~~~~v~~G~~~KR~ 99 (131)
.+++++||+|+++|+|+|||++|++|++||+|+|+|+|..|.|+|+||++||++|+++| +|+|||+++|||+|+++|||
T Consensus 3 ~r~ir~SpkK~r~v~~~IrG~~v~~Al~~L~~~~kkaA~~i~k~L~sA~aNA~~~~~~~~~~~L~I~~~~v~~G~~~KR~ 82 (110)
T 2ftc_M 3 RRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRI 82 (110)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf 57372687999999999869909999999851760148999999999999999832877665669999998988722376
Q ss_pred EECCCCCCCCEECCCCEEEEEEEECCCC
Q ss_conf 0256666372017850089999851723
Q gi|254780256|r 100 HCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131)
Q Consensus 100 ~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131)
+||||||+++|+||+|||||+|+|.+++
T Consensus 83 ~~rarGR~~~i~k~~sHItvvL~Eg~~p 110 (110)
T 2ftc_M 83 RYHGRGRFGIMEKVYCHYFVKLVEGPPP 110 (110)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 8663789887568804499999628998
No 2
>>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (P:22-134)
Probab=100.00 E-value=8e-39 Score=249.20 Aligned_cols=113 Identities=39% Similarity=0.482 Sum_probs=110.5
Q ss_pred HEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC
Q ss_conf 12311214875088999999998479869999988865820247999999999999998405998233699999988981
Q gi|254780256|r 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSV 94 (131)
Q Consensus 15 ~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~ 94 (131)
+|++|.++++++||+|+++|+++||||++++|++||+|+|+|+|.+++|+|.||++||++++|+|+|+|||++|||++||
T Consensus 1 k~~~a~~~~i~~S~kK~~~v~~~IrG~~v~~A~~~L~~~~kk~a~~i~k~l~sA~~nA~~~~~~d~~~L~I~~~~v~~G~ 80 (113)
T 2zjr_P 1 KPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGP 80 (113)
T ss_dssp CTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECC
T ss_pred CHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 32345326363588999999999869919999999852847877779999999999999825998403699999978996
Q ss_pred EEEEEEECCCCCCCCEECCCCEEEEEEEECCCC
Q ss_conf 142010256666372017850089999851723
Q gi|254780256|r 95 FMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131)
Q Consensus 95 ~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131)
++||++||||||++++++++|||+|+|+|.++|
T Consensus 81 ~~Kr~~~rarGR~~~~~k~~~hi~vvL~E~~~~ 113 (113)
T 2zjr_P 81 TLKRLIPRARGSANIIKKRTSHITIIVAEKGNK 113 (113)
T ss_dssp CEEEEEECSTTCEEEEEECCEEEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 132668865888776336851199999746889
No 3
>>3i1n_S 50S ribosomal protein L22; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_Q 1p86_Q 1vs8_S 2aw4_S 2awb_S 1vs6_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* 2qp1_S* ... (S:)
Probab=100.00 E-value=1.6e-38 Score=247.42 Aligned_cols=110 Identities=42% Similarity=0.523 Sum_probs=108.2
Q ss_pred HEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC
Q ss_conf 12311214875088999999998479869999988865820247999999999999998405998233699999988981
Q gi|254780256|r 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSV 94 (131)
Q Consensus 15 ~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~ 94 (131)
+|++|.++++++||+|+++++++||||++++|++||+|+|+|+|..|+++|+||.+||++++|+|+|+|||+++|||+||
T Consensus 1 me~~a~~~~i~~S~kK~~~v~~~IrG~~v~~A~~~L~~~p~K~a~~i~k~l~sa~~nA~~~~~~d~~~L~I~~~~v~~g~ 80 (110)
T 3i1n_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGP 80 (110)
T ss_dssp CCCEEEEEEESSCSTTHHHHHHHHTTSBHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSCCCTTSCEEEEEEEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCC
T ss_conf 94898618862487999999999869909999999834863688999999999999886004898134499999979986
Q ss_pred EEEEEEECCCCCCCCEECCCCEEEEEEEEC
Q ss_conf 142010256666372017850089999851
Q gi|254780256|r 95 FMKRFHCRGRQRIGRIVRPFSRLTVIVREV 124 (131)
Q Consensus 95 ~~KR~~prarGRa~~i~k~~sHi~VvL~e~ 124 (131)
++||++||||||++++++|+|||+|+|+|.
T Consensus 81 ~~kr~~~rarGR~~~~~k~~~hi~vvL~Ek 110 (110)
T 3i1n_S 81 SMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp EEECCEECGGGCEECCEEEEEEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 024758840478775237862389998069
No 4
>>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} (A:)
Probab=100.00 E-value=7.4e-37 Score=237.60 Aligned_cols=110 Identities=44% Similarity=0.495 Sum_probs=106.4
Q ss_pred HEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC
Q ss_conf 12311214875088999999998479869999988865820247999999999999998405998233699999988981
Q gi|254780256|r 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSV 94 (131)
Q Consensus 15 ~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~ 94 (131)
+|++|..+++++||+|+++||++||||++++|++||+|+|+|+|..++|+|+||++||++++|+|+|+|||+++|||+||
T Consensus 1 me~~a~~~~ir~S~kK~~~va~~IrG~~v~~Al~~L~~~~~K~a~~i~k~l~sA~anA~~~~~~d~~~L~I~~~~v~~G~ 80 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP 80 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf 92798708762488999999999869919999999645984317999999999999999852998220599999989997
Q ss_pred EEEEEEECCCCCCCCEECCCCEEEEEEEECCCC
Q ss_conf 142010256666372017850089999851723
Q gi|254780256|r 95 FMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131)
Q Consensus 95 ~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131)
+++||||||++++++|+|||+|+|+|.+++
T Consensus 81 ---~~k~rarGr~~~i~k~~~hI~vvl~e~~~~ 110 (110)
T 1i4j_A 81 ---AVLPRARGRADIIKKRTSHITVILGEKHGK 110 (110)
T ss_dssp ---EECSCSSSCCCSCCEEEEEEEEEEEESSCC
T ss_pred ---CCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf ---078664789886068977789999237789
No 5
>>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (r:)
Probab=100.00 E-value=5.6e-36 Score=232.43 Aligned_cols=116 Identities=26% Similarity=0.256 Sum_probs=110.2
Q ss_pred HHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC--------------------------------CCHHH
Q ss_conf 2101123112148750889999999984798699999888658--------------------------------20247
Q gi|254780256|r 11 RMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFS--------------------------------RKRIA 58 (131)
Q Consensus 11 ~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~--------------------------------~kk~A 58 (131)
...+++++|.++++++||+|+++|+++||||++++|+.||+|+ |+++|
T Consensus 9 ~~~~~~~ka~~~~i~~S~kK~~~va~~Irg~~v~~A~~~L~~v~~~k~~vp~~r~~~~~~~~~~~~~~~~~~~~~pkKaa 88 (184)
T 2zkr_r 9 ENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSA 88 (184)
T ss_dssp SCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHH
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 89875389966877476699999999878987999999999987500023677532776640002336878664818899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCC
Q ss_conf 999999999999998405998233699999988981142010256666372017850089999851723
Q gi|254780256|r 59 GEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131)
Q Consensus 59 ~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131)
.+|.++|+||.+||+++ |+|+|+|||++||||+|+++||++|||+||++++++++|||+|||+|.++.
T Consensus 89 ~~i~k~L~sa~aNA~~~-g~D~~~L~I~~~~v~~G~~~Kr~~~rArGRa~~i~k~~~hi~vvL~e~~~~ 156 (184)
T 2zkr_r 89 EFLLHMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQI 156 (184)
T ss_dssp HHHHHHHHHHHHHHHHH-TSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 99999999999889864-998543289999858985103655046777786047985189999636645
No 6
>>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (R:)
Probab=100.00 E-value=1.6e-36 Score=235.67 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=113.9
Q ss_pred HHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------------------------------HCCCH
Q ss_conf 767421011231121487508899999999847986999998886------------------------------58202
Q gi|254780256|r 7 VSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE------------------------------FSRKR 56 (131)
Q Consensus 7 ~~~~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~------------------------------f~~kk 56 (131)
.+.....+++++|..+++++||+|+++||++||||++++|+.||+ |+|++
T Consensus 5 ~~~~~~~~~~~ka~~~~~~~S~kK~~~va~~Irg~~v~~A~~~L~~v~~kk~~vp~~r~~~~~~~~~~~~~~~~~~~p~k 84 (155)
T 1vq8_R 5 YSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEK 84 (155)
T ss_dssp CSSCCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHH
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 44679998358998478757679999999997798999999999998752322322100455354324357776768488
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC
Q ss_conf 479999999999999984059982336999999889811420102566663720178500899998517233
Q gi|254780256|r 57 IAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG 128 (131)
Q Consensus 57 ~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~ 128 (131)
+|..|.++|.||.+||+++ |+|+|+|||++||||+|+++||++||||||++++++|+|||+|+|+|.++++
T Consensus 85 aa~~i~k~L~sa~~nA~~~-g~d~~~L~I~~~~v~kG~~~kr~~~rArGR~~~~~~~~~hi~vvL~E~~~~~ 155 (155)
T 1vq8_R 85 ASKAFLDLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVED 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 9999999999999877613-8874462889999778840235561556787860289710899996167779
No 7
>>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (U:)
Probab=100.00 E-value=3.3e-38 Score=245.56 Aligned_cols=117 Identities=28% Similarity=0.359 Sum_probs=112.6
Q ss_pred HHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEC
Q ss_conf 10112311214875088999999998479869999988865820247999999999999998405998233699999988
Q gi|254780256|r 12 MGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVG 91 (131)
Q Consensus 12 ~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~ 91 (131)
..+.+++|.++++++||+|++++|++||||+|++|+.||+|+|+++|.+|+++|.||++||++++|+|+|+|||+++|||
T Consensus 27 ~~~~~~~a~~~~ir~S~KK~~~va~~IrG~~v~eA~~~L~~~~kK~a~~i~k~L~sA~anA~~~~~~d~~~L~I~~~~v~ 106 (199)
T 3bbo_U 27 GKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVN 106 (199)
T ss_dssp ---CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCC
T ss_pred CCCCEEEEECCEEEECHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
T ss_conf 98514899768521487999999999869919999999712966679999999999999997225555553489999988
Q ss_pred CCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC
Q ss_conf 9811420102566663720178500899998517233
Q gi|254780256|r 92 KSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG 128 (131)
Q Consensus 92 ~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~ 128 (131)
+||++||++|||+||++++++++|||+|||+|.+++.
T Consensus 107 ~g~~~kr~~~rArGR~~~~~~~~~hi~ivL~E~~~~~ 143 (199)
T 3bbo_U 107 KGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFD 143 (199)
T ss_dssp BCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH
T ss_conf 8973548798746788775589723899998787146
No 8
>>2wwb_I 60S ribosomal protein L17-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_I 2ww9_I 1s1i_N (I:)
Probab=100.00 E-value=1.7e-35 Score=229.65 Aligned_cols=118 Identities=28% Similarity=0.243 Sum_probs=111.8
Q ss_pred HHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--------------------------------HCCCHH
Q ss_conf 421011231121487508899999999847986999998886--------------------------------582024
Q gi|254780256|r 10 RRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE--------------------------------FSRKRI 57 (131)
Q Consensus 10 ~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~--------------------------------f~~kk~ 57 (131)
...++++++|.++++++||+|+++|+++||||+|++|+.||+ |+|+|+
T Consensus 8 ~~~~~~~v~a~~~~~~~S~kk~~~va~~Irg~~v~~A~~~L~~v~~kk~avp~~r~~~g~~~~~~~~~~~~~~~~~pkKa 87 (184)
T 2wwb_I 8 STNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKS 87 (184)
T ss_dssp CCCGGGEEEEEEEEESSCHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSCSCCCSSCCCCSSCCCCSCCSSCCCCCCCTHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHCCCCCCCCCHHH
T ss_conf 78998128995488724669999999998798499999999998750042036776176563456664188777485789
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC
Q ss_conf 79999999999999984059982336999999889811420102566663720178500899998517233
Q gi|254780256|r 58 AGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG 128 (131)
Q Consensus 58 A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~ 128 (131)
|..|.++|+||.+||++ +|+|+|+|||++||||+|+++||++|||+||++++++++|||+|+|+|.+++.
T Consensus 88 a~~i~k~L~sa~~nA~~-~g~D~~~L~I~~i~v~kg~~~kr~~~rArGR~~~~~~~~~hi~viL~E~~~~~ 157 (184)
T 2wwb_I 88 VKFVQGLLQNAAANAEA-KGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAV 157 (184)
T ss_dssp HHHHHHHHHHHHHHTTS-SCCCSSCCCEEEEEEECCCCEEEEEEEETTEEEEEEECCEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 99999999999987651-13673243999999888853367671235688860389744899997376445
No 9
>>1q48_A ISCU, NIFU-like protein; iron-sulfur cluster binding, three conserved Cys, 3 beta strands, 4 alpha helixes, NESG, structural genomics; NMR {Haemophilus influenzae} (A:)
Probab=78.97 E-value=4.8 Score=20.46 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=52.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH--------HHH--CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHE
Q ss_conf 2311214875088999999998479869999988--------865--8202479999999999999984059982336
Q gi|254780256|r 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALAD--------LEF--SRKRIAGEVRKTLCSAVANAENNHDLDVDRL 83 (131)
Q Consensus 16 e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~--------L~f--~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L 83 (131)
.++-.+..--+|--=+-.+++++.|+++++|... |.. ...+.|....++|+.|+.+++..+|.+.+.+
T Consensus 55 d~~f~~~GC~~~~Asas~~~~~~~Gk~~~ea~~i~~~~i~~~l~~~p~r~~Ca~l~~~al~~al~~~~~~~~~~~~~~ 132 (134)
T 1q48_A 55 DAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEHHHH 132 (134)
T ss_dssp EEEEECCSSTTTHHHHHHHHHHHTTSBHHHHTTCCHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHHTTSSCCSCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 889983588999999999999985996999997039999987437874006899999999999999999749832345
No 10
>>1wfz_A Nitrogen fixation cluster-like; iron-sulfur cluster biosynthesis, three conserved Cys, structural genomics; NMR {Mus musculus} (A:)
Probab=71.16 E-value=5.5 Score=20.13 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=45.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----------HCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 31121487508899999999847986999998886----------5820247999999999999998405998
Q gi|254780256|r 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE----------FSRKRIAGEVRKTLCSAVANAENNHDLD 79 (131)
Q Consensus 17 ~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~----------f~~kk~A~~i~k~L~SA~aNA~~n~~ld 79 (131)
++-.+..--+|--=+-.++++|.|++++||..+=. -...+.|....++|+.|+.+.+..++-.
T Consensus 52 ~~f~~~GC~~~~Asas~l~e~i~Gkt~~e~~~i~~~~i~~~l~~~~~R~~Ca~l~~~al~~ai~~~~~~~~~~ 124 (130)
T 1wfz_A 52 ARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESK 124 (130)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9988308835478999999998602468988506199998717995213589999999999999999744375
No 11
>>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} (A:)
Probab=64.99 E-value=6.2 Score=19.85 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=47.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH-----------HCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 231121487508899999999847986999998886-----------582024799999999999999840599
Q gi|254780256|r 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE-----------FSRKRIAGEVRKTLCSAVANAENNHDL 78 (131)
Q Consensus 16 e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~-----------f~~kk~A~~i~k~L~SA~aNA~~n~~l 78 (131)
+++-.+..--+|-==+-.++++++|+++++|+.+.. -...+.|....++|+.|+.+....++-
T Consensus 55 d~~f~~~GC~i~~Asas~l~e~i~Gkti~ea~~i~~~~i~~~~~~~~~~r~~Ca~l~~~al~~al~~y~~r~~~ 128 (157)
T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGR 128 (157)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTC
T ss_pred HHEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 10124327836678999999999806687877303599999966999751529999999999999999972477
No 12
>>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} (B:)
Probab=60.10 E-value=12 Score=18.13 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.8
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----HC-------------------------CCHHHHHHHHHHHH
Q ss_conf 31121487508899999999847986999998886----58-------------------------20247999999999
Q gi|254780256|r 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE----FS-------------------------RKRIAGEVRKTLCS 67 (131)
Q Consensus 17 ~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~----f~-------------------------~kk~A~~i~k~L~S 67 (131)
++-.+..--+|--=+-.+++++.|+++++|+.+.. +. ..+.|.+..++|+.
T Consensus 58 i~f~~~GC~i~~ASas~l~e~i~gkt~~ea~~i~~~~~~~~~g~~~~~~~~~~~l~~l~~v~~~~~R~~Ca~L~~~al~~ 137 (159)
T 1su0_B 58 IAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKE 137 (159)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78885366688999999999982898999999999999987435677422236788740767686212899889999999
Q ss_pred HHHHHHHCCCCCHHHE
Q ss_conf 9999984059982336
Q gi|254780256|r 68 AVANAENNHDLDVDRL 83 (131)
Q Consensus 68 A~aNA~~n~~ld~~~L 83 (131)
|+.+++...+...+.+
T Consensus 138 al~~~~~~~~~~~~~~ 153 (159)
T 1su0_B 138 AIKRSANAQHLTDQNV 153 (159)
T ss_dssp HHTC------------
T ss_pred HHHHHHHCCCCHHHCC
T ss_conf 9996774332113123
No 13
>>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} (A:)
Probab=29.51 E-value=40 Score=15.02 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=38.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-----------------------------CCCHHHHHHHHHHHH
Q ss_conf 311214875088999999998479869999988865-----------------------------820247999999999
Q gi|254780256|r 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEF-----------------------------SRKRIAGEVRKTLCS 67 (131)
Q Consensus 17 ~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f-----------------------------~~kk~A~~i~k~L~S 67 (131)
++-.++.--+|-==+-.++.++.|+++++|+....- +..+.|.+..+.|+.
T Consensus 59 ~~f~~~GC~i~~Asas~l~~~~~Gkti~ea~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~R~~Ca~L~~~al~~ 138 (147)
T 1xjs_A 59 AKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEK 138 (147)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77674246898999999999973898999999999999986057777322256788730767687401399879999999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780256|r 68 AVANAE 73 (131)
Q Consensus 68 A~aNA~ 73 (131)
|+.+++
T Consensus 139 al~~~~ 144 (147)
T 1xjs_A 139 GVAKEE 144 (147)
T ss_dssp HSCSTT
T ss_pred HHHHHH
T ss_conf 999865
No 14
>>1nex_A Centromere DNA-binding protein complex CBF3 subunit D; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, ligase, cell cycle; HET: TPO; 2.70A {Saccharomyces cerevisiae} (A:58-148)
Probab=28.09 E-value=36 Score=15.29 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=13.6
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999984798699999888
Q gi|254780256|r 31 LNLVAAMIRGKRVSDALADL 50 (131)
Q Consensus 31 ~r~va~~IrG~~v~eAl~~L 50 (131)
.+.||++|+|++++|=-.++
T Consensus 69 c~~vA~~ikgKt~eeiR~~f 88 (91)
T 1nex_A 69 CKVVAEXIRGRSPEEIRRTF 88 (91)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 99999998499999999993
No 15
>>2i88_A Colicin-E1; protein-membrane interactions, toxin-membrane interactions, toxin structure, voltage-gated channel, membrane protein; 2.50A {Escherichia coli} (A:)
Probab=26.42 E-value=46 Score=14.69 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCC---CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999984798---6999998886582024799999999999999840
Q gi|254780256|r 28 PQKLNLVAAMIRGK---RVSDALADLEFSRKRIAGEVRKTLCSAVANAENN 75 (131)
Q Consensus 28 p~K~r~va~~IrG~---~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n 75 (131)
-+=.+.+++.++|+ +++||+..++=...-...-+-+-=+.|+.||-..
T Consensus 37 ~~iA~elA~~~KGKkIRn~~dAl~s~eK~~~n~~~K~n~kDr~AI~~Al~s 87 (191)
T 2i88_A 37 SKMAQELADKSKGKKIGNVNEALAAFEKYKDVLNKKFSKADRDAIFNALAS 87 (191)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHH
T ss_conf 999999998842224325999999999987365443233269999999997
No 16
>>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes} (A:)
Probab=26.41 E-value=32 Score=15.59 Aligned_cols=18 Identities=6% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHCCCCHHHHHHHHHHCC
Q ss_conf 847986999998886582
Q gi|254780256|r 37 MIRGKRVSDALADLEFSR 54 (131)
Q Consensus 37 ~IrG~~v~eAl~~L~f~~ 54 (131)
.++-|+++||+.||+.+.
T Consensus 9 ~~kpmsveeAv~qmel~~ 26 (57)
T 3k2t_A 9 SLKPMDSEEAVLQMNLLG 26 (57)
T ss_dssp --CCBCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHCCC
T ss_conf 378899999999986079
No 17
>>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} (B:45-141)
Probab=24.82 E-value=45 Score=14.73 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=12.9
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999984798699999888
Q gi|254780256|r 31 LNLVAAMIRGKRVSDALADL 50 (131)
Q Consensus 31 ~r~va~~IrG~~v~eAl~~L 50 (131)
.+.||+.|+|++++|=-..+
T Consensus 70 c~~vA~~i~gKs~eeiR~~f 89 (97)
T 1fs1_B 70 CKTVANMIKGKTPEEIRKTF 89 (97)
T ss_dssp HHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 99999998199999999996
No 18
>>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum} (A:)
Probab=21.46 E-value=44 Score=14.81 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=13.4
Q ss_pred HCCCCHHHHHHHHHHCC
Q ss_conf 47986999998886582
Q gi|254780256|r 38 IRGKRVSDALADLEFSR 54 (131)
Q Consensus 38 IrG~~v~eAl~~L~f~~ 54 (131)
++-|+++||+.||..+.
T Consensus 10 ~~pmsveeAv~qmel~~ 26 (65)
T 3ka5_A 10 IKPXSEEEAVLEXELLG 26 (65)
T ss_dssp CSCBCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHCCC
T ss_conf 78899999999986489
Done!