HHSEARCH alignment of GI: 254780256 and SCOP domain: d1i4ja_

Alignment
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}
Probab=100.00  E-value=1.7e-40  Score=256.70  Aligned_cols=110  Identities=44%  Similarity=0.494  Sum_probs=106.2

Q ss_pred             HEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC
Q ss_conf             12311214875088999999998479869999988865820247999999999999998405998233699999988981
Q gi|254780256|r   15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSV   94 (131)
Q Consensus        15 ~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~   94 (131)
                      +|++|.+||+|+||+|+|+|+++|||++|++|+.||+|+|+++|++|+|+|+||++||++++|+|+|+|||+++|||+||
T Consensus         1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~f~~~kaa~~i~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~   80 (110)
T d1i4ja_           1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
T ss_conf             90798808663488999999999869919999999702861027899999999999998634977203489999988996


Q ss_pred             EEEEEEECCCCCCCCEECCCCEEEEEEEECCCC
Q ss_conf             142010256666372017850089999851723
Q gi|254780256|r   95 FMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE  127 (131)
Q Consensus        95 ~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~  127 (131)
                      ++|   ||||||+++|+||+|||+|+|+|.+.+
T Consensus        81 ~~k---~rarGRa~~i~k~~sHi~vvL~e~~~k  110 (110)
T d1i4ja_          81 AVL---PRARGRADIIKKRTSHITVILGEKHGK  110 (110)
T ss_dssp             EEC---SCSSSCCCSCCEEEEEEEEEEEESSCC
T ss_pred             EEC---HHHCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf             577---111367786347766689999406789


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]