RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22
[Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>gnl|CDD|179067 PRK00565, rplV, 50S ribosomal protein L22; Reviewed.
          Length = 112

 Score =  150 bits (381), Expect = 1e-37
 Identities = 59/112 (52%), Positives = 76/112 (67%)

Query: 15  NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAEN 74
            EA A A  +RVSP+K  LVA +IRGK+V +ALA L+FS K+ A  V+K L SA+ANAEN
Sbjct: 1   MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAEN 60

Query: 75  NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSD 126
           NH LD+D L+V EAYV +   +KRF  R R R  RI +  S +TV+V E  +
Sbjct: 61  NHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKEE 112


>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type.  This
           model decribes bacterial and chloroplast ribosomal
           protein L22.
          Length = 103

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 46/103 (44%), Positives = 65/103 (63%)

Query: 19  AIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDL 78
           A A  +R+SP+K  LVA +IRGK VS AL  L F+ K+ A  ++K L SA+ANAE+N+ L
Sbjct: 1   AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60

Query: 79  DVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIV 121
           D D L+V   +V +   +KR   R + R  RI +  S +TV+V
Sbjct: 61  DADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV 103


>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
           protein; Provisional.
          Length = 311

 Score = 55.5 bits (133), Expect = 5e-09
 Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 16  EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAE-N 74
               I   + +S +K +LV  ++R K V +A+  L  + K+ A  V K L SA++N + N
Sbjct: 2   TNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHN 61

Query: 75  NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127
           + D+D  +L + +    +   MKR   R +    ++ +  + L +++ +  +E
Sbjct: 62  SKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNE 114


>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed.
          Length = 153

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 31/142 (21%)

Query: 13  GDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE-------------FSRK---- 55
            +  A A+   L +SP+    +A  IRG ++ +A A LE              ++K    
Sbjct: 12  PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHR 71

Query: 56  -------------RIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCR 102
                        + A    K L +A ANAE    LD ++L++      K   +K +  R
Sbjct: 72  KGIDGWPAGRYPVKAAKAFLKLLENAEANAEYK-GLDTEKLVIVHIAAHKGRVIKGYMPR 130

Query: 103 GRQRIGRIVRPFSRLTVIVREV 124
              R          + VI+ EV
Sbjct: 131 AFGRATPKNTETVNIEVILEEV 152


>gnl|CDD|130110 TIGR01038, L22_arch, ribosomal protein
           L22(archaeal)/L17(eukaryotic/archaeal).  This model
           describes the ribosomal protein of the eukaryotic
           cytosol and of the Archaea, variously designated as L17,
           L22, and L23. The corresponding bacterial homolog,
           described by a separate model, is designated L22.
          Length = 150

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 33/140 (23%)

Query: 17  ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE----------FSR------------ 54
           A A    LRVS +     A  IRG  +  A   LE          F R            
Sbjct: 12  AKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLK 71

Query: 55  ----------KRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGR 104
                      + A  + K L +A ANAE    LDV++L++      K   ++R+  R  
Sbjct: 72  EWGWTAGRYPVKAAKFILKVLQNAEANAEYK-GLDVEKLVIIHIQANKGPKIRRWMPRAF 130

Query: 105 QRIGRIVRPFSRLTVIVREV 124
            R        + + ++V E 
Sbjct: 131 GRATPYNSSPTHIELVVEEK 150


>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
          Length = 943

 Score = 28.5 bits (65), Expect = 0.48
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 30  KLNLVAAMIRGKRVS--DALADLE---FSRKRIAGEVRKTLCSAVANAEN-NHDLD--VD 81
           +L ++A ++RG++      L +L    F R R+ GEV   L       +N  H ++  VD
Sbjct: 149 RLQILAPVVRGRKGEHKKLLENLRKQGFVRVRVDGEVY-DLDEPPKLDKNKKHTIEVVVD 207

Query: 82  RLIVSE 87
           RL+V E
Sbjct: 208 RLVVKE 213


>gnl|CDD|151892 pfam11453, DUF2950, Protein of unknown function (DUF2950).  This is
           a bacterial family of uncharacterized proteins.
          Length = 266

 Score = 28.0 bits (63), Expect = 0.77
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 3   GKRSVSKRRMGDNEANAIASML 24
           G+  +  RR+G NE  AI + L
Sbjct: 98  GREEILTRRIGRNELAAIQTCL 119


>gnl|CDD|179095 PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.
          Length = 378

 Score = 26.5 bits (59), Expect = 1.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 108 GRIVRPFSRLTVIVREVSDE 127
           GR VR   RL VIVRE ++E
Sbjct: 217 GRKVRFGIRLHVIVRETNEE 236


>gnl|CDD|182339 PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.
          Length = 158

 Score = 26.3 bits (58), Expect = 2.3
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 7/29 (24%)

Query: 76  HDLDVDRLIVSE----AYVGKSVFMKRFH 100
           H LDV+R+ V E    A VG   F   FH
Sbjct: 121 HALDVERIDVDEGASGAMVG---FNVHFH 146


>gnl|CDD|185501 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional.
          Length = 181

 Score = 25.8 bits (57), Expect = 3.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 61  VRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRI 107
           V   L +A ANAE    LDV++L++S   V ++   +R   R   RI
Sbjct: 91  VLSLLKNAEANAEA-KGLDVEKLVISHVQVNRAPRGRRRTYRAHGRI 136


>gnl|CDD|132604 TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase,
           FMNH(2)-dependent.  Members of this protein family are
           monooxygenases that catalyze desulfonation of aliphatic
           sulfonates such as methane sulfonate. This enzyme uses
           reduced FMN, although various others members of the same
           luciferase-like monooxygenase family (pfam00296) are
           F420-dependent enzymes.
          Length = 346

 Score = 25.0 bits (55), Expect = 5.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 106 RIGRIVRPFSRLTVIVREVSDE 127
           + GR VR   RL VIVRE  +E
Sbjct: 214 KRGRTVRFGIRLHVIVRETEEE 235


>gnl|CDD|180992 PRK07476, eutB, threonine dehydratase; Provisional.
          Length = 322

 Score = 24.5 bits (54), Expect = 8.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 47 LADLEFSRKRIAGEVRKT 64
          LAD+  +R+RIAG VR+T
Sbjct: 3  LADIYRARRRIAGRVRRT 20


>gnl|CDD|163143 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit
           A.  Members of this largely archaeal protein family are
           subunit A of the formylmethanofuran dehydrogenase.
           Nomenclature in some bacteria may reflect inclusion of
           the formyltransferase described by TIGR03119 as part of
           the complex, and therefore call this protein
           formyltransferase/hydrolase complex Fhc subunit A. Note
           that this model does not distinguish tungsten (FwdA)
           from molybdenum-containing (FmdA) forms of this enzyme;
           a single gene from this family is expressed
           constitutively in Methanobacterium thermoautotrophicum,
           which has both tungsten and molybdenum forms and may
           work interchangeably.
          Length = 556

 Score = 24.6 bits (54), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 106 RIGRIVRPFSRLTVIVREVSDEGKVV 131
           R G+IV P S  T   + +   GK+V
Sbjct: 26  RDGKIVEPVSGGTKPAKVIDASGKLV 51


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,076,054
Number of extensions: 124296
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 26
Length of query: 131
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,201,009
Effective search space: 201648432
Effective search space used: 201648432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)