RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >gnl|CDD|179067 PRK00565, rplV, 50S ribosomal protein L22; Reviewed. Length = 112 Score = 150 bits (381), Expect = 1e-37 Identities = 59/112 (52%), Positives = 76/112 (67%) Query: 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAEN 74 EA A A +RVSP+K LVA +IRGK+V +ALA L+FS K+ A V+K L SA+ANAEN Sbjct: 1 MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAEN 60 Query: 75 NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSD 126 NH LD+D L+V EAYV + +KRF R R R RI + S +TV+V E + Sbjct: 61 NHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKEE 112 >gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type. This model decribes bacterial and chloroplast ribosomal protein L22. Length = 103 Score = 85.6 bits (212), Expect = 3e-18 Identities = 46/103 (44%), Positives = 65/103 (63%) Query: 19 AIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDL 78 A A +R+SP+K LVA +IRGK VS AL L F+ K+ A ++K L SA+ANAE+N+ L Sbjct: 1 AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60 Query: 79 DVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIV 121 D D L+V +V + +KR R + R RI + S +TV+V Sbjct: 61 DADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV 103 >gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional. Length = 311 Score = 55.5 bits (133), Expect = 5e-09 Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAE-N 74 I + +S +K +LV ++R K V +A+ L + K+ A V K L SA++N + N Sbjct: 2 TNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHN 61 Query: 75 NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 + D+D +L + + + MKR R + ++ + + L +++ + +E Sbjct: 62 SKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNE 114 >gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed. Length = 153 Score = 43.3 bits (103), Expect = 2e-05 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 31/142 (21%) Query: 13 GDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE-------------FSRK---- 55 + A A+ L +SP+ +A IRG ++ +A A LE ++K Sbjct: 12 PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHR 71 Query: 56 -------------RIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCR 102 + A K L +A ANAE LD ++L++ K +K + R Sbjct: 72 KGIDGWPAGRYPVKAAKAFLKLLENAEANAEYK-GLDTEKLVIVHIAAHKGRVIKGYMPR 130 Query: 103 GRQRIGRIVRPFSRLTVIVREV 124 R + VI+ EV Sbjct: 131 AFGRATPKNTETVNIEVILEEV 152 >gnl|CDD|130110 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal). This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22. Length = 150 Score = 39.8 bits (93), Expect = 2e-04 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 33/140 (23%) Query: 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE----------FSR------------ 54 A A LRVS + A IRG + A LE F R Sbjct: 12 AKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLK 71 Query: 55 ----------KRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGR 104 + A + K L +A ANAE LDV++L++ K ++R+ R Sbjct: 72 EWGWTAGRYPVKAAKFILKVLQNAEANAEYK-GLDVEKLVIIHIQANKGPKIRRWMPRAF 130 Query: 105 QRIGRIVRPFSRLTVIVREV 124 R + + ++V E Sbjct: 131 GRATPYNSSPTHIELVVEEK 150 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 28.5 bits (65), Expect = 0.48 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Query: 30 KLNLVAAMIRGKRVS--DALADLE---FSRKRIAGEVRKTLCSAVANAEN-NHDLD--VD 81 +L ++A ++RG++ L +L F R R+ GEV L +N H ++ VD Sbjct: 149 RLQILAPVVRGRKGEHKKLLENLRKQGFVRVRVDGEVY-DLDEPPKLDKNKKHTIEVVVD 207 Query: 82 RLIVSE 87 RL+V E Sbjct: 208 RLVVKE 213 >gnl|CDD|151892 pfam11453, DUF2950, Protein of unknown function (DUF2950). This is a bacterial family of uncharacterized proteins. Length = 266 Score = 28.0 bits (63), Expect = 0.77 Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 3 GKRSVSKRRMGDNEANAIASML 24 G+ + RR+G NE AI + L Sbjct: 98 GREEILTRRIGRNELAAIQTCL 119 >gnl|CDD|179095 PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional. Length = 378 Score = 26.5 bits (59), Expect = 1.9 Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 108 GRIVRPFSRLTVIVREVSDE 127 GR VR RL VIVRE ++E Sbjct: 217 GRKVRFGIRLHVIVRETNEE 236 >gnl|CDD|182339 PRK10257, PRK10257, putative kinase inhibitor protein; Provisional. Length = 158 Score = 26.3 bits (58), Expect = 2.3 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 7/29 (24%) Query: 76 HDLDVDRLIVSE----AYVGKSVFMKRFH 100 H LDV+R+ V E A VG F FH Sbjct: 121 HALDVERIDVDEGASGAMVG---FNVHFH 146 >gnl|CDD|185501 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional. Length = 181 Score = 25.8 bits (57), Expect = 3.5 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 61 VRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRI 107 V L +A ANAE LDV++L++S V ++ +R R RI Sbjct: 91 VLSLLKNAEANAEA-KGLDVEKLVISHVQVNRAPRGRRRTYRAHGRI 136 >gnl|CDD|132604 TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. Length = 346 Score = 25.0 bits (55), Expect = 5.8 Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 106 RIGRIVRPFSRLTVIVREVSDE 127 + GR VR RL VIVRE +E Sbjct: 214 KRGRTVRFGIRLHVIVRETEEE 235 >gnl|CDD|180992 PRK07476, eutB, threonine dehydratase; Provisional. Length = 322 Score = 24.5 bits (54), Expect = 8.8 Identities = 11/18 (61%), Positives = 15/18 (83%) Query: 47 LADLEFSRKRIAGEVRKT 64 LAD+ +R+RIAG VR+T Sbjct: 3 LADIYRARRRIAGRVRRT 20 >gnl|CDD|163143 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. Length = 556 Score = 24.6 bits (54), Expect = 9.0 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 106 RIGRIVRPFSRLTVIVREVSDEGKVV 131 R G+IV P S T + + GK+V Sbjct: 26 RDGKIVEPVSGGTKPAKVIDASGKLV 51 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.134 0.365 Gapped Lambda K H 0.267 0.0725 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,076,054 Number of extensions: 124296 Number of successful extensions: 272 Number of sequences better than 10.0: 1 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 26 Length of query: 131 Length of database: 5,994,473 Length adjustment: 83 Effective length of query: 48 Effective length of database: 4,201,009 Effective search space: 201648432 Effective search space used: 201648432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (23.8 bits)