RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22
[Candidatus Liberibacter asiaticus str. psy62]
(131 letters)
>3ofq_S 50S ribosomal protein L22; protein biosynthesis, ribosomes, RNA,
tRNA, transfer, antibi EXIT, peptidyl, ribosomal
subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Q
1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S
2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S*
2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Length = 110
Score = 127 bits (321), Expect = 9e-31
Identities = 46/108 (42%), Positives = 66/108 (61%)
Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENN 75
E A R S QK+ LVA +IRGK+VS AL L ++ K+ A V+K L SA+ANAE+N
Sbjct: 2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 76 HDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123
D+D L V++ +V + MKR R + R RI++ S +TV+V +
Sbjct: 62 DGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 118 bits (299), Expect = 3e-28
Identities = 48/112 (42%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENN 75
EA AIA +R+SP+K+ LV +IRGK + +A L ++ KR A V K L SA ANA NN
Sbjct: 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 76 HDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127
HD DRL V AYV + + R R R I + S +TVI+ E +
Sbjct: 62 HDALEDRLYVKAAYVDEGPAVLP---RARGRADIIKKRTSHITVILGEKHGK 110
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L*
1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q*
2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 1pnu_Q 1pny_Q
1vor_T 1vou_T 1vow_T ...
Length = 134
Score = 116 bits (293), Expect = 1e-27
Identities = 45/125 (36%), Positives = 65/125 (52%)
Query: 3 GKRSVSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVR 62
K+ ++ A+A +R+SP+K+ LV +IRGK V DA L F + + V
Sbjct: 10 NKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVA 69
Query: 63 KTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVR 122
K L SA ANA +N ++ DRL V EAYV +KR R R I + S +T+IV
Sbjct: 70 KVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVA 129
Query: 123 EVSDE 127
E ++
Sbjct: 130 EKGNK 134
>3i1n_S 50S ribosomal protein L22; ribosome structure, protein-RNA complex,
acetylation, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1p85_Q 1p86_Q 1vs8_S 2aw4_S
2awb_S 1vs6_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S*
2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S
2qoz_S* 2qp1_S* ...
Length = 110
Score = 115 bits (289), Expect = 4e-27
Identities = 46/108 (42%), Positives = 66/108 (61%)
Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENN 75
E A R S QK+ LVA +IRGK+VS AL L ++ K+ A V+K L SA+ANAE+N
Sbjct: 2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 76 HDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123
D+D L V++ +V + MKR R + R RI++ S +TV+V +
Sbjct: 62 DGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 199
Score = 111 bits (278), Expect = 6e-26
Identities = 33/113 (29%), Positives = 56/113 (49%)
Query: 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAEN 74
+E + +S K V IRG+ ++ L LE R + K + SA ANA +
Sbjct: 30 DEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASH 89
Query: 75 NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127
N + LI+S+A V K + +K+ R R R I+RP +T+++R+++
Sbjct: 90 NKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHF 142
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal RNA; 12.10A
{Bos taurus} PDB: 3iy9_M
Length = 110
Score = 100 bits (250), Expect = 1e-22
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 23 MLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDR 82
++ S K+ +A +IRG + ALA LEF+ K+ A +++ L A A +H+++
Sbjct: 5 QIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRS 64
Query: 83 -LIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123
L ++E+ G+ +KR GR R G + + + V + E
Sbjct: 65 NLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVE 106
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex,
RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB:
1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R*
1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R*
1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Length = 155
Score = 89.2 bits (221), Expect = 3e-19
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 31/150 (20%)
Query: 8 SKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE---------------- 51
S D A A+ ++S + +A I+GK +A+ LE
Sbjct: 6 SVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNS 65
Query: 52 --------------FSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMK 97
++ + L +AV NA+ + D + + + K +
Sbjct: 66 GVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNAD-HQGFDGEAMTIKHVAAHKVGEQQ 124
Query: 98 RFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127
R R P + +I+ E E
Sbjct: 125 GRKPRAMGRASAWNSPQVDVELILEEPEVE 154
>2wwb_I 60S ribosomal protein L17-A; ribosome, protein EXIT tunnel,
cotranslational protein translocation, protein
conducting channel; 6.48A {Triticum aestivum} PDB:
2wwa_I 2ww9_I 1s1i_N
Length = 184
Score = 87.3 bits (216), Expect = 9e-19
Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 14 DNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE---------------------- 51
A+A S LRVS + A I G ++ A LE
Sbjct: 12 AKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTA 71
Query: 52 ----------FSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHC 101
+ V+ L +A ANAE LD +L VS V ++ +R
Sbjct: 72 QGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKG-LDATKLYVSHIQVNQAPKQRRRTY 130
Query: 102 RGRQRIGRIVRPFSRLTVIVREVSDE 127
R RI + S + ++V E +
Sbjct: 131 RAHGRINKYESSPSHIELVVTEKEEA 156
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 84.6 bits (209), Expect = 6e-18
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 33/144 (22%)
Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE------------------------ 51
+ S LRV + A I+G + A L+
Sbjct: 14 SCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQA 73
Query: 52 --------FSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRG 103
K+ A + L +A +NAE LDVD L++ V K+ M+R R
Sbjct: 74 KQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG-LDVDSLVIEHIQVNKAPKMRRRTYRA 132
Query: 104 RQRIGRIVRPFSRLTVIVREVSDE 127
RI + + +I+ E
Sbjct: 133 HGRINPYMSSPCHIEMILTEKEQI 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.3 bits (59), Expect = 1.2
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 4 KRSVSK-----RRMGDNEANAI---ASM 23
K+++ K + D+ A A+ A+M
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor,
DNA-binding, transcription/DNA; HET: BRU; 1.85A
{Escherichia coli}
Length = 101
Score = 26.7 bits (59), Expect = 1.6
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 9 KRRMGDNEANAIASMLRVSPQKLNLV-AAMIRGKRVSDALADLEFSRKRIAGEVRK 63
K+R+ +++ L V Q + + ++ GK + L +R ++ V +
Sbjct: 2 KKRLTESQFQEAIQGLEVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHR 57
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase;
HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 24.9 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 53 SRKRIAGEVRKTLCSAVANAENNH 76
SRK +A +R AV A++ H
Sbjct: 3 SRKELANAIRALSMDAVQKAKSGH 26
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 24.5 bits (53), Expect = 7.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALA 48
+E R+SP+ L + + V+ +A
Sbjct: 348 HERGLRLEETRLSPEGLARLVGLFERGEVTSRVA 381
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.134 0.365
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,058,186
Number of extensions: 45301
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 18
Length of query: 131
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 49
Effective length of database: 3,705,222
Effective search space: 181555878
Effective search space used: 181555878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)