RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780257|ref|YP_003064670.1| SSU ribosomal protein S19P
[Candidatus Liberibacter asiaticus str. psy62]
(92 letters)
>gnl|CDD|30534 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal
structure and biogenesis].
Length = 93
Score = 121 bits (304), Expect = 5e-29
Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Query: 1 MARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPV 60
M RS++KGPFV K LLKKV +A++SG + ++ W R I+P+ +GLT V+NG+K VPV
Sbjct: 1 MRRSLKKGPFVDKHLLKKVRKAKESGKKKPIKTWSRRSTILPEMVGLTIAVHNGKKFVPV 60
Query: 61 SVSEEMVGFKLGDFAPTRHCPGHGSDK-KAKRK 92
++EEMVG KLG+FAPTR GHG+D KA R
Sbjct: 61 EITEEMVGHKLGEFAPTRTFVGHGADGIKATRS 93
>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19.
Length = 92
Score = 109 bits (275), Expect = 1e-25
Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 1 MARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPV 60
M RS++K PFV LLKK+ + + ++ W R I+P IG T V+NG++H+P+
Sbjct: 1 MTRSLKKNPFVANHLLKKIEKLNTKEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPI 60
Query: 61 SVSEEMVGFKLGDFAPTRHCPGHG-SDKKAKR 91
++++MVG KLG+FAPTR+ GH +DKK++R
Sbjct: 61 YITDQMVGHKLGEFAPTRNFRGHAKNDKKSRR 92
>gnl|CDD|143960 pfam00203, Ribosomal_S19, Ribosomal protein S19.
Length = 79
Score = 98.9 bits (247), Expect = 2e-22
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 3 RSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSV 62
RS++KGPFV LL+K+ + + + V++ W R I+P+ +G T VYNG++ VPV +
Sbjct: 1 RSLKKGPFVDLKLLRKIKKENTANEKEVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVYI 60
Query: 63 SEEMVGFKLGDFAPTRH 79
+ EMVG KLG+FAPTR
Sbjct: 61 TPEMVGHKLGEFAPTRK 77
>gnl|CDD|36117 KOG0899, KOG0899, KOG0899, Mitochondrial/chloroplast ribosomal
protein S19 [Translation, ribosomal structure and
biogenesis].
Length = 93
Score = 89.0 bits (220), Expect = 3e-19
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 1 MARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPV 60
M RSV KGPFV K LL+K+ + + G+ ++ W R I+P +G TF ++NG++HVPV
Sbjct: 10 MTRSVWKGPFVVKFLLRKIEKLK---GKAPIKTWSRASTILPTMVGHTFAIHNGKEHVPV 66
Query: 61 SVSEEMVGFKLGDFAPTRHCPGHGSDK 87
++E+MVG KLG+FAPTR GH K
Sbjct: 67 KITEDMVGHKLGEFAPTRKFFGHAKTK 93
>gnl|CDD|36116 KOG0898, KOG0898, KOG0898, 40S ribosomal protein S15 [Translation,
ribosomal structure and biogenesis].
Length = 152
Score = 53.8 bits (129), Expect = 1e-08
Identities = 28/79 (35%), Positives = 39/79 (49%)
Query: 6 RKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEE 65
RK + K L K +A VV+ RN I+P+ +G GVYNG+ V + E
Sbjct: 58 RKPHSLIKKLRKAKKEAPPMEKPEVVKTHLRNMIIVPEMVGSMVGVYNGKTFNQVEIKPE 117
Query: 66 MVGFKLGDFAPTRHCPGHG 84
M+G LG+F+ T HG
Sbjct: 118 MIGHYLGEFSITYKPVKHG 136
>gnl|CDD|37227 KOG2016, KOG2016, KOG2016, NEDD8-activating complex, APP-BP1/UBA5
component [Posttranslational modification, protein
turnover, chaperones].
Length = 523
Score = 25.7 bits (56), Expect = 2.8
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 12 TKSLLKKVSQARDSGGRGVVRVWCRNCD 39
+ +LK + ++ DS V++++C+N
Sbjct: 352 VQEVLKSLGRSPDSISDDVIKLFCKNAA 379
>gnl|CDD|109881 pfam00843, Arena_nucleocap, Arenavirus nucleocapsid protein.
Length = 534
Score = 24.2 bits (53), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 13 KSLLKKVSQARDSGGR-GVVRVW 34
+L+ V + GGR GVVRVW
Sbjct: 135 SEILRLVGMRQPQGGRNGVVRVW 157
>gnl|CDD|163694 cd08063, MPN_CSN6, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in COP9
signalosome complex subunit 6. CSN6 (COP9 signalosome
subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one
of the eight subunits of COP9 signalosome, a highly
conserved protein complex with diverse functions,
including several important intracellular pathways such
as the ubiquitin/proteasome system, DNA repair, cell
cycle, developmental changes, and some aspects of
immune responses. CSN6 is an MPN-domain protein that
directly interacts with the MPN+-domain subunit CSN5.
It is cleaved during apoptosis by activated caspases.
CSN6 processing occurs in CSN/CRL (cullin-RING Ub
ligase) complexes and is followed by the cleavage of
Rbx1, the direct interaction partner of CSN6. CSN6
cleavage enhances CSN-mediated deneddylating activity
(i.e. cleavage of ubiquitin-like protein Nedd8 (neural
precursor cell expressed, developmentally downregulated
8)) in the cullin 1 in cells. The cleavage of Rbx1 and
increased deneddylation of cullins inactivate CRLs and
presumably stabilize pro-apoptotic factors for final
apoptotic steps. While CSN6 shows a typical MPN
metalloprotease fold, it lacks the canonical JAMM
motif, and therefore does not show catalytic
isopeptidase activity.
Length = 288
Score = 24.5 bits (54), Expect = 7.0
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 30 VVRVWCRNCDIMPQFIGLTFGVYNGRK 56
+ R ++ P+ +G G +GR+
Sbjct: 17 ITRHRAQSQSEPPRVVGALLGQQDGRE 43
>gnl|CDD|35856 KOG0637, KOG0637, KOG0637, Sucrose transporter and related proteins
[Carbohydrate transport and metabolism].
Length = 498
Score = 24.1 bits (52), Expect = 8.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 45 IGLTFGVYNGRKHVPVSVSEEMVGFKLGDFA 75
IGL G + P ++ ++GF L D A
Sbjct: 125 IGLLLGDNERKPVKPRAIVLFILGFWLLDVA 155
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.139 0.437
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,099,976
Number of extensions: 49501
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 12
Length of query: 92
Length of database: 6,263,737
Length adjustment: 61
Effective length of query: 31
Effective length of database: 4,945,588
Effective search space: 153313228
Effective search space used: 153313228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)