HHsearch alignment for GI: 254780259 and conserved domain: TIGR03636
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=99.86 E-value=1.2e-21 Score=145.86 Aligned_cols=70 Identities=43% Similarity=0.672 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 320799888864-8909999888789889999999996874337899851896333112246644322345444345881
Q gi|254780259|r 13 PVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMYVSRKDV 91 (110)
Q Consensus 13 P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~~k~~~~ 91 (110)
T Consensus 1 P~iTEKa~~~~e~~N~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~--------------------------~g~ 54 (77)
T TIGR03636 1 PLVTEKAMNLIEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP--------------------------RGE 54 (77)
T ss_pred CCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEECEEEEEECC--------------------------CCC
T ss_conf 924789999898689799998897998999999999819852579844868--------------------------997
Q ss_pred EEEEEECCCCC-EECCCC
Q ss_conf 38999958997-313324
Q gi|254780259|r 92 KRAFVTLAKGY-SIDISA 108 (110)
Q Consensus 92 KKAiVtL~~G~-~I~~~~ 108 (110)
T Consensus 55 KKAyV~L~~~~~A~dva~ 72 (77)
T TIGR03636 55 KKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 789998599997999998