HHsearch alignment of GI: 254780259 and MMDB domain: 1vq8_S_
>1vq8_S (S:) 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=99.93 E-value=1.3e-26 Score=174.11 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=72.0
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
+||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|.+|
T Consensus 2 ~~~ii~~P~~TEKs~~l~e~~n~y~F~V~~~atK~~IK~ave~lf~VkV~~Vnt~~~~~--------------------- 60 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD--------------------- 60 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---------------------
T ss_pred CCCEECCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCC---------------------
T ss_conf 70010135007988998986877999976868989999999998399300898767489---------------------
Q ss_pred CCCCCCCEEEEEECCCCCEE-CCCCCC
Q ss_conf 43458813899995899731-332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSI-DISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I-~~~~gi 110 (110)
+||||||+|++|++| |+++++
T Consensus 61 -----k~KKA~V~L~~~~~~~~~a~~i 82 (85)
T 1vq8_S 61 -----GEKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp -----SSEEEEEEECTTSCHHHHHTTC
T ss_pred -----CCEEEEEEECCCCCHHHHHHHC
T ss_conf -----9578999918999689999731