Query gi|254780259|ref|YP_003064672.1| 50S ribosomal protein L23 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 117 out of 1550
Neff 5.4
Searched_HMMs 33803
Date Tue May 24 06:45:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780259.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjr_Q 50S ribosomal protein 100.0 1.3E-34 3.7E-39 220.2 7.6 93 4-109 1-93 (95)
2 >3i1n_T 50S ribosomal protein 100.0 9.9E-35 2.9E-39 220.8 2.5 97 1-110 2-99 (100)
3 >3fin_X 50S ribosomal protein 100.0 1.7E-34 4.9E-39 219.5 -1.8 93 5-110 1-93 (93)
4 >2wwb_K 60S ribosomal protein 99.9 6.7E-28 2E-32 181.5 7.7 84 1-110 54-139 (142)
5 >2zkr_s 60S ribosomal protein 99.9 9.5E-28 2.8E-32 180.6 7.0 84 1-110 68-153 (156)
6 >1vq8_S 50S ribosomal protein 99.9 1.3E-26 3.8E-31 174.1 7.8 79 6-110 2-82 (85)
7 >3bbo_V Ribosomal protein L23; 99.9 1.1E-26 3.2E-31 174.5 1.4 80 2-107 107-187 (198)
8 >2go5_4 Ribosomal protein L23; 99.9 2.7E-26 7.8E-31 172.3 2.8 87 1-102 64-151 (152)
9 >2uyz_B Small ubiquitin-relate 48.3 22 0.00065 17.2 4.2 36 24-59 12-47 (79)
10 >1z2m_A ISG15, interferon, alp 43.4 26 0.00078 16.8 5.0 43 24-66 11-54 (78)
11 >2dzm_A FAS-associated factor 42.1 26 0.00078 16.8 3.2 43 25-67 18-60 (100)
12 >2w9n_A Ubiquitin, diubiquitin 39.8 30 0.00089 16.4 4.1 36 24-59 11-46 (78)
13 >3g12_A Putative lactoylglutat 38.3 23 0.00069 17.0 2.5 20 89-108 38-57 (66)
14 >1j8c_A Ubiquitin-like protein 35.2 36 0.0011 16.0 5.0 41 24-65 40-80 (125)
15 >1euv_B Ubitqutin-like protein 33.7 38 0.0011 15.9 4.0 36 24-59 19-54 (86)
16 >3a9j_A Ubiquitin; protein com 33.5 38 0.0011 15.8 4.1 36 24-59 9-44 (76)
17 >2v94_A RPS24, 30S ribosomal p 32.6 21 0.00061 17.4 1.4 45 17-61 16-64 (107)
18 >1wju_A NEDD8 ultimate buster- 31.0 42 0.0012 15.6 3.3 41 24-65 28-68 (100)
19 >2io0_B Small ubiquitin-relate 30.6 43 0.0013 15.6 3.9 42 23-65 13-54 (91)
20 >1ywx_A 30S ribosomal protein 30.2 12 0.00035 18.7 -0.1 43 18-60 9-54 (72)
21 >2kd0_A LRR repeats and ubiqui 28.9 46 0.0013 15.4 3.4 36 24-59 20-55 (85)
22 >1bq0_A DNAJ, HSP40; chaperone 28.6 37 0.0011 15.9 2.2 20 30-49 9-28 (103)
23 >2dzj_A Synaptic glycoprotein 27.9 45 0.0013 15.4 2.5 41 26-66 24-66 (88)
24 >2w9n_A Ubiquitin, diubiquitin 27.4 48 0.0014 15.2 4.1 42 23-65 8-49 (74)
25 >2hj8_A Interferon-induced 17 27.4 49 0.0014 15.2 3.9 37 23-59 12-48 (88)
26 >1wxv_A BAG-family molecular c 27.4 16 0.00046 18.1 0.1 34 26-59 22-55 (92)
27 >1ttn_A DC-UBP, dendritic cell 25.6 49 0.0015 15.2 2.4 36 24-59 32-67 (106)
28 >1iyf_A Parkin; ubiquitin fold 25.1 49 0.0015 15.2 2.3 36 24-59 14-49 (81)
29 >1wx7_A Ubiquilin 3; ubiquitin 23.9 56 0.0017 14.8 4.3 41 24-65 25-65 (106)
30 >1x4b_A Heterogeneous nuclear 23.6 57 0.0017 14.8 2.8 37 25-61 28-64 (116)
31 >2kan_A Uncharacterized protei 23.6 57 0.0017 14.8 4.1 35 25-59 24-58 (94)
32 >2g1d_A 30S ribosomal protein 23.3 12 0.00035 18.8 -1.2 41 19-59 10-54 (98)
33 >1l2n_A Ubiquitin-like protein 23.1 59 0.0017 14.8 3.8 41 24-65 31-71 (101)
34 >1wel_A RNA-binding protein 12 22.9 59 0.0018 14.7 2.6 42 26-67 27-68 (124)
35 >1z2m_A ISG15, interferon, alp 22.2 61 0.0018 14.6 4.5 36 24-59 12-47 (77)
36 >1xn9_A 30S ribosomal protein 22.2 18 0.00054 17.7 -0.4 44 18-61 9-55 (101)
37 >1hd0_A Protein (heterogeneous 22.2 57 0.0017 14.8 2.1 30 27-56 2-31 (75)
38 >2faz_A Ubiquitin-like contain 21.7 63 0.0019 14.6 4.4 38 26-64 15-52 (78)
39 >1ndd_A NEDD8, protein (ubiqui 21.3 64 0.0019 14.5 4.2 36 24-59 9-44 (76)
40 >1b7f_A Protein (SXL-lethal pr 20.5 66 0.002 14.4 3.2 43 25-67 6-48 (84)
No 1
>>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (Q:)
Probab=100.00 E-value=1.3e-34 Score=220.24 Aligned_cols=93 Identities=38% Similarity=0.553 Sum_probs=88.5
Q ss_pred CHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 25786760032079988886489099998887898899999999968743378998518963331122466443223454
Q gi|254780259|r 4 IRFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRD 83 (110)
Q Consensus 4 ~~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~ 83 (110)
|++||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|++||.||++++.
T Consensus 1 m~~~~vI~~p~iTEKs~~l~e~n~~~F~V~~~anK~eIK~ave~~f~VkV~~VnT~~~~gK~kR~~~~~----------- 69 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFI----------- 69 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCC-----------
T ss_pred CCCCCEEEECCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECCCC-----------
T ss_conf 970018750410887887776997999981888989999999998399637998898279615768844-----------
Q ss_pred CCCCCCCCEEEEEECCCCCEECCCCC
Q ss_conf 44345881389999589973133248
Q gi|254780259|r 84 MYVSRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 84 ~~~k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
|++++||||||||++|++||||+|
T Consensus 70 --g~~~~~KKA~VtL~~g~~i~~~~~ 93 (95)
T 2zjr_Q 70 --GQRNDRKKAIVRLAEGQSIEALAG 93 (95)
T ss_dssp --CCCCCBEEEEEECCSSCCCSSTTT
T ss_pred --CCCCCCEEEEEECCCCCEECCCCC
T ss_conf --013897999999589796401378
No 2
>>3i1n_T 50S ribosomal protein L23; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_R 1p86_R 1vs8_T 2aw4_T 2awb_T 1vs6_T 2i2v_T 2i2t_T* 2qao_T* 2qba_T* 2qbc_T* 2qbe_T 2qbg_T 2qbi_T* 2qbk_T* 2qov_T 2qox_T 2qoz_T* 2qp1_T* 2rdo_T ... (T:)
Probab=100.00 E-value=9.9e-35 Score=220.82 Aligned_cols=97 Identities=40% Similarity=0.596 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|.+|++||+|++|++||||+.+.| .|+|+|.|+++|||+|||+|||++|+|+|.+|||+|.+||.||+++
T Consensus 2 m~~~~~~~vi~~pv~TEKs~~~~e~~n~ytF~V~~~atK~eIK~aiE~~f~VkV~~VnT~~~~~k~kR~~~--------- 72 (100)
T 3i1n_T 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ--------- 72 (100)
T ss_dssp CSCGGGCCCCCEECCCHHHHHHTTTTSCCCEECCSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCBCCSSS---------
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECC---------
T ss_conf 86679998775041588889878659889999589899999999999982996059998884784367588---------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 3454443458813899995899731332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
..|++++||||||||++|++||||+|.
T Consensus 73 ----~~g~~~~~KKAiVtL~~g~~i~~~~~~ 99 (100)
T 3i1n_T 73 ----RIGRRSDWKKAYVTLKEGQNLDFVGGA 99 (100)
T ss_dssp ----SCCBCCCEEECCCCCSSSCCC------
T ss_pred ----CCCCCCCCEEEEEECCCCCEEEECCCC
T ss_conf ----441348988999995899926542568
No 3
>>3fin_X 50S ribosomal protein L23; ribonucleoprotein, metal-binding, RNA- binding, rRNA-binding, zinc, tRNA-binding, repressor; 6.40A {Thermus thermophilus} PDB: 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X 2wdn_X 2wh2_X 2wh4_X 3d5b_X 3d5d_X ... (X:)
Probab=99.97 E-value=1.7e-34 Score=219.53 Aligned_cols=93 Identities=43% Similarity=0.588 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 57867600320799888864890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 5 RFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 5 ~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
++||+|++|++||||++++|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|.+||.||+++ .
T Consensus 1 n~~dii~~p~iTEKs~~l~e~n~y~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gK~kr~~~-------------~ 67 (93)
T 3fin_X 1 TAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR-------------Y 67 (93)
T ss_dssp CCSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCC-------------C
T ss_pred CCHHEEECCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECC-------------C
T ss_conf 921364325228868666768969999808889899999999980997059998984796057788-------------3
Q ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 43458813899995899731332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
.|++++||||||||++|++||||+||
T Consensus 68 ~g~~~~~KKA~VtL~~g~~I~~~~~i 93 (93)
T 3fin_X 68 LGKRPDRKKAIVQVAPGQKIEALEGL 93 (93)
T ss_dssp CSCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
T ss_conf 42458988999993896980264798
No 4
>>2wwb_K 60S ribosomal protein L25; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_K 2ww9_K 1s1i_T (K:)
Probab=99.95 E-value=6.7e-28 Score=181.47 Aligned_cols=84 Identities=33% Similarity=0.550 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHC-CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 9852578676003207998888648-909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e~-n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+.|++|++|++|++||||+.+.|+ |+|+|.||++|||+|||+|||++|+|+|.+|||++.++
T Consensus 54 ~~~ld~~~iI~~Pl~TEka~~~~E~~N~lvF~Vd~~AnK~qIK~AVe~ly~VkV~kVNTli~~~---------------- 117 (142)
T 2wwb_K 54 YNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN---------------- 117 (142)
T ss_dssp ---CCCCCSEEEECCSHHHHHHHHHHSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEECCTT----------------
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCC----------------
T ss_conf 6667743321037542888999985898999978989989999999998198342798767389----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf 345444345881389999589973-1332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYS-IDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~-I~~~~gi 110 (110)
+||||||+|++|++ ||++++|
T Consensus 118 ----------g~KKA~V~L~~d~~aldva~ki 139 (142)
T 2wwb_K 118 ----------GTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp ----------SSEEEEEEECSTTCSSSSSSCC
T ss_pred ----------CCEEEEEEECCCCCHHHHHHCC
T ss_conf ----------9388999979998389997512
No 5
>>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (s:)
Probab=99.94 E-value=9.5e-28 Score=180.61 Aligned_cols=84 Identities=33% Similarity=0.523 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+.|++||+|++|++||||+.+.| +|+|+|.||.+|||+||++|||++|+|+|.+|||++.++
T Consensus 68 ~~~~d~y~iIk~Pl~TEka~~~~E~nntlvFiVd~~AnK~qIK~AVe~lf~VkV~kVNTl~~~~---------------- 131 (156)
T 2zkr_s 68 RNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD---------------- 131 (156)
T ss_dssp --------CEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS----------------
T ss_pred CCCCCHHHEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC----------------
T ss_conf 6778864555526441546998742562799847878989999999998198102788757489----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-EECCCCCC
Q ss_conf 34544434588138999958997-31332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY-SIDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~-~I~~~~gi 110 (110)
+||||||+|++|+ .||++++|
T Consensus 132 ----------g~KKA~V~L~~~~daldvankI 153 (156)
T 2zkr_s 132 ----------GEKKAYVRLAPDYDALDVANKI 153 (156)
T ss_dssp ----------SCEEEEEEECTTSCHHHHHHHC
T ss_pred ----------CCEEEEEEECCCCCHHHHHHCC
T ss_conf ----------9368999968997289997502
No 6
>>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (S:)
Probab=99.93 E-value=1.3e-26 Score=174.11 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=72.0
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
+||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|.+|
T Consensus 2 ~~~ii~~P~~TEKs~~l~e~~n~y~F~V~~~atK~~IK~ave~lf~VkV~~Vnt~~~~~--------------------- 60 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD--------------------- 60 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---------------------
T ss_pred CCCEECCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCC---------------------
T ss_conf 70010135007988998986877999976868989999999998399300898767489---------------------
Q ss_pred CCCCCCCEEEEEECCCCCEE-CCCCCC
Q ss_conf 43458813899995899731-332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSI-DISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I-~~~~gi 110 (110)
+||||||+|++|++| |+++++
T Consensus 61 -----k~KKA~V~L~~~~~~~~~a~~i 82 (85)
T 1vq8_S 61 -----GEKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp -----SSEEEEEEECTTSCHHHHHTTC
T ss_pred -----CCEEEEEEECCCCCHHHHHHHC
T ss_conf -----9578999918999689999731
No 7
>>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (V:)
Probab=99.92 E-value=1.1e-26 Score=174.49 Aligned_cols=80 Identities=33% Similarity=0.502 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHC-CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf 852578676003207998888648-9099998887898899999999968743378998518963331122466443223
Q gi|254780259|r 2 INIRFYDTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRS 80 (110)
Q Consensus 2 ~~~~~~~vi~~P~~TEKs~~~~e~-n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~ 80 (110)
+.|++|+||++|++||||+.+.|+ |+|+|.||.+|||+|||+|||++|+|+|.+|||+++++
T Consensus 107 ~~ld~~~IIk~Pl~TEKa~k~iEdnNtlvFiVd~kANK~qIK~AVekLydVkV~kVNTli~p~----------------- 169 (198)
T 3bbo_V 107 RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD----------------- 169 (198)
T ss_dssp ---CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT-----------------
T ss_pred HHCCHHHEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----------------
T ss_conf 007875640015217888998987786999989999989999999998298013798657389-----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEECCC
Q ss_conf 454443458813899995899731332
Q gi|254780259|r 81 SRDMYVSRKDVKRAFVTLAKGYSIDIS 107 (110)
Q Consensus 81 ~r~~~~k~~~~KKAiVtL~~G~~I~~~ 107 (110)
+||||||+|++|++++++
T Consensus 170 ---------g~KKA~V~La~d~~aldv 187 (198)
T 3bbo_V 170 ---------GTKKAYIMLNKEYNASEL 187 (198)
T ss_dssp ---------TEEECCEEECTTTCTTTH
T ss_pred ---------CCEEEEEEECCCCCHHHH
T ss_conf ---------927899996899847888
No 8
>>2go5_4 Ribosomal protein L23; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_4 (4:)
Probab=99.92 E-value=2.7e-26 Score=172.28 Aligned_cols=87 Identities=25% Similarity=0.307 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+.|++|++|++|++||||+.+.| +|+|+|.||++|||+|||+|||++|+|+|.+|||+|.+++.+|.
T Consensus 64 ~~~ld~~~iIk~Pl~TEKa~~~~E~nnt~vF~Vd~kAnK~qIK~AVekly~VkV~kVNTl~~~~k~Kka----------- 132 (152)
T 2go5_4 64 RNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKA----------- 132 (152)
T ss_dssp -----CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCSHHHHHHHHHHHCCCEEEEEEECCSSSSEEE-----------
T ss_pred CCCCCHHHHHEECCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE-----------
T ss_conf 455896561000643087899873075079982686886999999999809800378866748995789-----------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 34544434588138999958997
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY 102 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~ 102 (110)
..+.+++|++|+|+|+.|-
T Consensus 133 ----~v~l~~d~kk~~ValkiG~ 151 (152)
T 2go5_4 133 ----YVKLTPDYDALDVANKIGI 151 (152)
T ss_dssp ----EEEECTTTCSHHHHHTC--
T ss_pred ----EEECCCCCCHHHHHHHCCC
T ss_conf ----9984899828999850344
No 9
>>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} (B:)
Probab=48.34 E-value=22 Score=17.21 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=32.6
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
....+.|.|+++.|=.++|+.++..+++.+...+-+
T Consensus 12 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~~~L~ 47 (79)
T 2uyz_B 12 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL 47 (79)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 999999998899939999999998879497997998
No 10
>>1z2m_A ISG15, interferon, alpha-inducible protein (clone IFI- 15K); ubiquitin cross reactive protein, signaling protein; 2.50A {Homo sapiens} (A:1-78)
Probab=43.35 E-value=26 Score=16.76 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=35.8
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE-EECCCCEE
Q ss_conf 48909999888789889999999996874337899-85189633
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNT-LIRKGKVK 66 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt-~~~~gK~K 66 (110)
..+.+++.|++++|=.++|+.++..+++.+..-+- +...|+.=
T Consensus 11 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~qrl~~~~~G~~L 54 (78)
T 1z2m_A 11 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVAL 54 (78)
T ss_dssp SSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEEECCCCCC
T ss_conf 99899999799793999999999886699788399990598525
No 11
>>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=42.07 E-value=26 Score=16.77 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=37.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 8909999888789889999999996874337899851896333
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKR 67 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr 67 (110)
...+.+.|+++.|=.++|+.|+..+++.+....-+...|+.-.
T Consensus 18 g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~ll~~~g~~l~ 60 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVE 60 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCC
T ss_conf 9699999899994999999999987799566799704892157
No 12
>>2w9n_A Ubiquitin, diubiquitin; cell cycle, K63, IKK, NEMO, Lys63, linear, signalling cell cycle; HET: FME; 2.25A {Homo sapiens} PDB: 2zvo_A 2zvn_A (A:75-152)
Probab=39.83 E-value=30 Score=16.43 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=32.6
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
....+.+.|+++.|=.++|+.++..+++.+....-+
T Consensus 11 ~g~~~~i~v~~~~tV~~lK~~i~~~~~v~~~~~~L~ 46 (78)
T 2w9n_A 11 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 46 (78)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHEEEC
T ss_conf 997223563331578889999888769692467981
No 13
>>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100} (A:63-128)
Probab=38.28 E-value=23 Score=17.05 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.4
Q ss_pred CCCEEEEEECCCCCEECCCC
Q ss_conf 88138999958997313324
Q gi|254780259|r 89 KDVKRAFVTLAKGYSIDISA 108 (110)
Q Consensus 89 ~~~KKAiVtL~~G~~I~~~~ 108 (110)
++-|||||-=.+|.+|++-|
T Consensus 38 pdgkkaivldpdghsielce 57 (66)
T 3g12_A 38 PDGKKAIVLDPDGHSIELCE 57 (66)
T ss_dssp C-CEEEEEECTTCCEEEEEC
T ss_pred CCEEEEEEECCCCCEEEEEE
T ss_conf 98999999999999999998
No 14
>>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} (A:)
Probab=35.20 E-value=36 Score=16.00 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=34.8
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
..+++.+.|+++.|=.++|+-|+..+++.+..... .+.|+.
T Consensus 40 ~~~~~~i~v~~~~tV~~lK~~i~~~~~v~~~~qrL-iy~Gk~ 80 (125)
T 1j8c_A 40 PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVL-IFAGKI 80 (125)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEE-EETTEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCEE
T ss_conf 99238999899991999999999887949678899-978868
No 15
>>1euv_B Ubitqutin-like protein SMT3; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} (B:)
Probab=33.71 E-value=38 Score=15.86 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=32.8
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..+.+.|.|++..|=.++|+.++..+++.+...+.+
T Consensus 19 ~g~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~L~ 54 (86)
T 1euv_B 19 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL 54 (86)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 997999998889819999999997768996796999
No 16
>>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 2o6v_D* 2wwz_A 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B 1s1q_B 1tbe_A 1ubi_A ... (A:)
Probab=33.51 E-value=38 Score=15.84 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=32.4
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..+.+.+.|++..|=.++|+.++..+++.+.....+
T Consensus 9 ~g~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~~~L~ 44 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHEEEE
T ss_conf 998999998797769999999888759890119999
No 17
>>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} (A:)
Probab=32.58 E-value=21 Score=17.36 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 99888864890999988----8789889999999996874337899851
Q gi|254780259|r 17 EKSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNTLIR 61 (110)
Q Consensus 17 EKs~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt~~~ 61 (110)
++...|..-.++.|.|. +..++.||+..+.++|++++.-|=+-..
T Consensus 16 ~~~N~LL~Rkei~~~v~h~g~~Tpsr~eirekLA~~~~~~~~~vvV~~~ 64 (107)
T 2v94_A 16 VKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAXLDLNPETTVIQYI 64 (107)
T ss_dssp EEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred EEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 4026884538999999728999989999999999866899888999806
No 18
>>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} (A:)
Probab=31.04 E-value=42 Score=15.60 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=34.1
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
....+.+.|++++|=.++|+.++..+++.+...+-+ ..|+.
T Consensus 28 ~~~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~qrLi-~~Gk~ 68 (100)
T 1wju_A 28 KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-INKKQ 68 (100)
T ss_dssp CSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETTEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEE-EEEEE
T ss_conf 984999996877189999999888668997169999-81167
No 19
>>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} (B:)
Probab=30.60 E-value=43 Score=15.55 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=34.8
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 6489099998887898899999999968743378998518963
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
.+...+.|.|+++.+=.++|+.++..+++.+....-+ ..|+.
T Consensus 13 ~~g~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~~L~-~~G~~ 54 (91)
T 2io0_B 13 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQP 54 (91)
T ss_dssp TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE-ETTEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCEE
T ss_conf 9998999994789909999999998879597793662-56788
No 20
>>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} (A:1-72)
Probab=30.20 E-value=12 Score=18.73 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=32.1
Q ss_pred HHHHHHHCCEEEEEEC---CCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 9888864890999988---878988999999999687433789985
Q gi|254780259|r 18 KSTLLAGQNQVVFNVK---KDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110)
Q Consensus 18 Ks~~~~e~n~y~F~V~---~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110)
+...|..-.++.|.|. +.-++.||++.+-++|++++.-|=+-.
T Consensus 9 ~~N~LL~Rke~~~~v~h~g~Tpsr~eir~kLa~~~~~~~~~vvv~~ 54 (72)
T 1ywx_A 9 RNNPLLQRREIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDT 54 (72)
T ss_dssp EEETTTTEEEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 4488814189999998889998999999999997792968899971
No 21
>>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} (A:)
Probab=28.89 E-value=46 Score=15.38 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=32.4
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..+.+.+.|+++.|=.++|+.++..+++.+...+.+
T Consensus 20 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 55 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI 55 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 999999998999909999999998879192567999
No 22
>>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} (A:)
Probab=28.58 E-value=37 Score=15.90 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.0
Q ss_pred EEECCCCCHHHHHHHHHHHH
Q ss_conf 99888789889999999996
Q gi|254780259|r 30 FNVKKDSSKSEIKSAVEALF 49 (110)
Q Consensus 30 F~V~~~atK~eIK~ave~~f 49 (110)
+-|+++||.-|||+|...+-
T Consensus 9 LGv~~~As~~eIk~AYrkla 28 (103)
T 1bq0_A 9 LGVSKTAEEREIRKAYKRLA 28 (103)
T ss_dssp TSSCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 19999989999999999988
No 23
>>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.88 E-value=45 Score=15.40 Aligned_cols=41 Identities=20% Similarity=0.074 Sum_probs=31.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE--EEECCCCEE
Q ss_conf 90999988878988999999999687433789--985189633
Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVN--TLIRKGKVK 66 (110)
Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vn--t~~~~gK~K 66 (110)
..+++.|+++.|=.++|+.|+..++..+...+ .+...|+.=
T Consensus 24 ~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~~~rL~~~Gk~L 66 (88)
T 2dzj_A 24 LCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSL 66 (88)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 8988447998869999999998778899432689807999866
No 24
>>2w9n_A Ubiquitin, diubiquitin; cell cycle, K63, IKK, NEMO, Lys63, linear, signalling cell cycle; HET: FME; 2.25A {Homo sapiens} PDB: 2zvo_A 2zvn_A (A:1-74)
Probab=27.44 E-value=48 Score=15.23 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 6489099998887898899999999968743378998518963
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
...+.+.|.|+++.|=.++|+.|+...++.+....- ...|+.
T Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~v~~~~~~L-~y~G~~ 49 (74)
T 2w9n_A 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQ 49 (74)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCEE
T ss_conf 999999999689383999999999986999337279-978859
No 25
>>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} (A:)
Probab=27.41 E-value=49 Score=15.22 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=32.9
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 6489099998887898899999999968743378998
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
...+.+++.|+++.|=.++|+.|+...++.+...+-+
T Consensus 12 ~~g~~~~i~v~~~~tV~~lK~~I~~~~~ip~~~qrL~ 48 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 9999999997897809999999998769794581898
No 26
>>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} (A:)
Probab=27.38 E-value=16 Score=18.08 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=30.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9099998887898899999999968743378998
Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
+.+.+.|+++.|=.++|+.|++.+++.+...+.+
T Consensus 22 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~ 55 (92)
T 1wxv_A 22 HVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI 55 (92)
T ss_dssp EECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9646768986739999999988788090150899
No 27
>>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} (A:)
Probab=25.56 E-value=49 Score=15.18 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=32.4
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..+.+++.|+++.|=.++|+.|+..+++.+....-+
T Consensus 32 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~ 67 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF 67 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHEEEE
T ss_conf 999999997884709999999862107662563776
No 28
>>1iyf_A Parkin; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; NMR {Homo sapiens} (A:)
Probab=25.12 E-value=49 Score=15.18 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=31.6
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
....+++.|+++.|=.++|..+++.+++.+....-.
T Consensus 14 ~g~~~~i~v~~~~tV~~lK~~i~~~~gi~~~~~~L~ 49 (81)
T 1iyf_A 14 SSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVI 49 (81)
T ss_dssp TTEEEEESSCSSSTHHHHHHHHHHHTTSCSSSSEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 999999998898779999997545449897524999
No 29
>>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=23.94 E-value=56 Score=14.84 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=34.5
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
...++.+.|+++.+=.++|+.|+..+++.+...+.+ ..|+.
T Consensus 25 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~~~Li-~~G~~ 65 (106)
T 1wx7_A 25 PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGKI 65 (106)
T ss_dssp SSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ETTEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHCEEE-EEEEE
T ss_conf 995299998997909999998767668495680354-53046
No 30
>>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=23.64 E-value=57 Score=14.81 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=29.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 8909999888789889999999996874337899851
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIR 61 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~ 61 (110)
...|+-.++.+++..+|++.++.+-.|.-..+..-..
T Consensus 28 ~~i~V~nLp~~~te~~l~~~f~~~G~v~~~~i~~~~~ 64 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA 64 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 8799938998688999999986145443302212456
No 31
>>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} (A:)
Probab=23.59 E-value=57 Score=14.80 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 89099998887898899999999968743378998
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..++.+.|+++.+=.++|+-|+..+++.+.....+
T Consensus 24 ~~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~Li 58 (94)
T 2kan_A 24 SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY 58 (94)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 96899997881859999999999849994508999
No 32
>>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} (A:)
Probab=23.31 E-value=12 Score=18.79 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.8
Q ss_pred HHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 888864890999988----87898899999999968743378998
Q gi|254780259|r 19 STLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 19 s~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
...|..-.+++|.|. +..++.||+..+.++|++++.-|=+-
T Consensus 10 ~N~LL~Rke~~~~v~h~g~~tpsr~eir~kLa~~~~~~~~~vvv~ 54 (98)
T 2g1d_A 10 DNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVD 54 (98)
T ss_dssp ECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECC
T ss_pred CCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 078846389999997089999899999999999978897889997
No 33
>>1l2n_A Ubiquitin-like protein SMT3; structure, protein binding; NMR {Saccharomyces cerevisiae} (A:)
Probab=23.12 E-value=59 Score=14.75 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=34.5
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
..+.+.|.|+++.|=.++|+.++..+++.+.....+ ..|+.
T Consensus 31 ~g~~~~l~v~~~~tv~~lk~~i~~~~g~~~~~~~L~-f~G~~ 71 (101)
T 1l2n_A 31 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR 71 (101)
T ss_dssp SSCCEEEEESCCCHHHHHHHHHHHHTTTTCCCCEEE-SSSSS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCEE
T ss_conf 992999998899909999999998879398992897-79989
No 34
>>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=22.93 E-value=59 Score=14.73 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=32.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 909999888789889999999996874337899851896333
Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKR 67 (110)
Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr 67 (110)
..|+-.++.+++..+|++.++.+-.|.-..+..-...++.+.
T Consensus 27 ~i~v~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~~~~g 68 (124)
T 1wel_A 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 68 (124)
T ss_dssp EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 999806603432888764443033332210246658996703
No 35
>>1z2m_A ISG15, interferon, alpha-inducible protein (clone IFI- 15K); ubiquitin cross reactive protein, signaling protein; 2.50A {Homo sapiens} (A:79-155)
Probab=22.22 E-value=61 Score=14.64 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=32.5
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
....+.+.|+++.+=.++|..++...|+.+....-+
T Consensus 12 ~g~~~~i~v~~~~tV~~lK~~i~~~~gi~~~~~~L~ 47 (77)
T 1z2m_A 12 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 47 (77)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 999999996898909999998988736665466888
No 36
>>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} (A:)
Probab=22.18 E-value=18 Score=17.67 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHCCEEEEEEC---CCCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 9888864890999988---8789889999999996874337899851
Q gi|254780259|r 18 KSTLLAGQNQVVFNVK---KDSSKSEIKSAVEALFSVKVVSVNTLIR 61 (110)
Q Consensus 18 Ks~~~~e~n~y~F~V~---~~atK~eIK~ave~~f~V~V~~Vnt~~~ 61 (110)
+...|..-.++.|.|. +.-+|.||+..+-++|+++..-|=+...
T Consensus 9 ~~N~LL~Rkei~~~v~h~g~tpsr~ei~~kla~~~~~~~~~vvv~~~ 55 (101)
T 1xn9_A 9 KKNPLLNRRELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRI 55 (101)
T ss_dssp EEETTTTEEEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 33788241899999978899989999999999977939577999757
No 37
>>1hd0_A Protein (heterogeneous nuclear ribonucleoprotein D0); RNA-binding domain, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=22.16 E-value=57 Score=14.83 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=22.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 099998887898899999999968743378
Q gi|254780259|r 27 QVVFNVKKDSSKSEIKSAVEALFSVKVVSV 56 (110)
Q Consensus 27 ~y~F~V~~~atK~eIK~ave~~f~V~V~~V 56 (110)
.|+-.++.++|..+|++.++..=.|.-..+
T Consensus 2 i~V~nlp~~~t~~~l~~~F~~~G~v~~i~i 31 (75)
T 1hd0_A 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 31 (75)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEEC
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEEEEE
T ss_conf 899289998989999999998497758776
No 38
>>2faz_A Ubiquitin-like containing PHD and ring finger domains protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, metal-binding; 2.00A {Homo sapiens} (A:)
Probab=21.72 E-value=63 Score=14.58 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=31.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 909999888789889999999996874337899851896
Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
..|.+.|+++.|=.++|+-++..+++.+...+.+ ..|+
T Consensus 15 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~qrLi-~~Gk 52 (78)
T 2faz_A 15 THTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRGK 52 (78)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCHHEEEE-EEEE
T ss_conf 5887505999989999999999989895125999-8726
No 39
>>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protein; 1.60A {Homo sapiens} (A:)
Probab=21.28 E-value=64 Score=14.53 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=32.7
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
....+.+.|+++.|=.++|+-++...++.+.....+
T Consensus 9 ~g~~~~i~v~~~~tV~~lK~~i~~~~gv~~~~~~L~ 44 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 44 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 998999998998939999999999879987650899
No 40
>>1b7f_A Protein (SXL-lethal protein); splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} (A:85-168)
Probab=20.54 E-value=66 Score=14.44 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=32.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 8909999888789889999999996874337899851896333
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKR 67 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr 67 (110)
...|+-.++.+++..+|++.++.+-.|....+..-...|+.+.
T Consensus 6 ~~i~V~~lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 48 (84)
T 1b7f_A 6 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 48 (84)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 7699998899788999999974414255035511456786577
Done!